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View Structure Prediction Details

Protein: YBL111C
Organism: Saccharomyces cerevisiae
Length: 667 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBL111C.

Description E-value Query
Range
Subject
Range
YML133C - Putative protein of unknown function with similarity to helicases; the authentic, non-tagged protein...
YMN3_YEAST - Y' element ATP-dependent helicase YML133C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...
1345.0 [0..1] [658..1]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVSDRRKFE KANFDEFESA LNNKNDLVHC PSITLFESIP TEVRSFYEDE KSGLIKVVKF  60
   61 RTGAMDRKRS FEKIVVSVMV GKNVQKFLTF VEDEPDFQGG PIPSKYLIP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [110-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKINLMVYTL FQVHTLKFNR KDYDTLSLFY LNRGYYNELS FRVLERCYEI ASARPNDSST  60
   61 MRTFTDFVSG TPIVRSLQKS TIRKYGYNLA PYMFLLLHVD ELSIFSAYQA SLPGEKKVDT 120
  121 ERLKRDLCPR KPTEIKYFSQ ICNDMMNKKD RLGDVLATAQ RIRRRYNKN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.461 N/A N/A a.29.2 Bromodomain
View Download 0.371 N/A N/A a.80.1 DNA polymerase III clamp loader subunits, C-terminal domain
View Download 0.356 N/A N/A a.246.2 Description not found.
View Download 0.349 N/A N/A a.152.1 Antioxidant defence protein AhpD
View Download 0.343 N/A N/A d.16.1 FAD-linked reductases, C-terminal domain
View Download 0.343 N/A N/A d.16.1 FAD-linked reductases, C-terminal domain
View Download 0.339 N/A N/A a.133.1 Phospholipase A2, PLA2
View Download 0.236 N/A N/A a.39.2 Insect pheromon/odorant-binding proteins
View Download 0.202 N/A N/A a.29.2 Bromodomain

Predicted Domain #3
Region A:
Residues: [279-346]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSSEPRLKTL DGLTSERWIQ WLGLESDYHC SFSSTRNAED VVAGEAASSD HDQKISRVTR  60
   61 KRPREPKS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.684 a.3.1 Cytochrome c
View Download 0.328 a.118.14 FliG
View Download 0.300 a.60.5 Barrier-to-autointegration factor, BAF
View Download 0.278 a.3.1 Cytochrome c

Predicted Domain #4
Region A:
Residues: [347-667]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNDILVAGRK LFGSSFEFRD LHQLRLCHEI YMADTPSVAV QAPPGYGKTE LFHLPLIALA  60
   61 SKGDVKYVSF LFVPYTVLLA NCMIRLGRRG CLNVAPVRNF IEEGCDGVTD LYVGIYDDLA 120
  121 STNFTDRIAA WENIVECTFR TNNVKLGYLI VDEFHNFETE VYRQSQFGGI TNLDFDAFEK 180
  181 AIFLSGTAPE AVADAALQRI GLTGLAKKSM DINELKRSED LSRGLSSYPT RMFNLIKEKS 240
  241 EVPLGHVHKI WKKVESQPEE ALKLLLALFE IEPESKAIVV ASTTNEVEEL ACSWRKYFRV 300
  301 VWIHGKLGCC RKGVSHKGVC H

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.85
Match: 2v1xA
Description: No description for 2v1xA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle