YRC Public Data Repository - Protein Structure Prediction

Protein:	YBL107C
Organism:	Saccharomyces cerevisiae
Length:	196 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBL107C.

Description	E-value	Query Range	Subject Range
gi\|49529064, gi\|... - gi\|50294678\|ref\|XP_449750.1\| hypothetical protein CAGL0M09339g [Candida glabrata CBS138], gi\|4952906... gi\|49529064 - gi\|49529064\|emb\|CAG62728.1\| unnamed protein product [Candida glabrata]	178.0	[0..7]	[188..10]
gi\|49643371, gi\|... - gi\|50308469\|ref\|XP_454236.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643371\|emb\|CAG9932... gi\|49643371 - gi\|49643371\|emb\|CAG99323.1\| KLLA0E06403p [Kluyveromyces lactis]	156.0	[0..10]	[193..18]
gi\|44981665 - gi\|44981665\|gb\|AAS51415.1\| ACR189Cp [Ashbya gossypii ATCC 10895] gi\|44981665, gi\|... - gi\|45185875\|ref\|NP_983591.1\| ACR189Cp [Ashbya gossypii ATCC 10895], gi\|44981665\|gb\|AAS51415.1\| ACR18...	105.0	[0..31]	[187..32]
gi\|49657428 - gi\|49657428\|emb\|CAG90215.1\| DEHA2G04884p [Debaryomyces hansenii] gi\|49657428, gi\|... - gi\|50426323\|ref\|XP_461758.1\| hypothetical protein DEHA0G05522g [Debaryomyces hansenii CBS767], gi\|49...	89.0	[0..33]	[191..13]
orf19.1198 - orf19.1198 CGDID:CAL0002163 Assembly 19, Contig19-10099 (43983, 43438) CDS, reverse complemented, tr... gi\|68487668, gi\|... - gi\|68487668\|ref\|XP_712315.1\| hypothetical protein CaO19.1198 [Candida albicans SC5314], gi\|46433693\|...	86.0	[0..22]	[190..2]
gi\|49647391, gi\|... - gi\|50548109\|ref\|XP_501524.1\| hypothetical protein [Yarrowia lipolytica], gi\|49647391\|emb\|CAG81827.1\|...	71.0	[0..9]	[178..19]
gi\|39940180, gi\|... - gi\|39940180\|ref\|XP_359627.1\| hypothetical protein MG05150.4 [Magnaporthe grisea 70-15], gb\|EAA52458....	61.0	[0..10]	[181..74]
gi\|32416326, gi\|... - gi\|32416326\|ref\|XP_328641.1\| predicted protein [Neurospora crassa], gi\|28924057\|gb\|EAA33215.1\| hypot... gi\|85107803 - gi\|85107803\|ref\|XP_962451.1\| hypothetical protein NCU11378 [Neurospora crassa OR74A]	59.0	[0..22]	[178..4]
gi\|119194497, gi... - gi\|90306638\|gb\|EAS36269.1\| hypothetical protein CIMG_01623 [Coccidioides immitis RS], gi\|119194497\|r...	56.0	[0..42]	[178..3]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDNRRTFTA PQSLLETNLT FPNDEPSLTT ITVTRERCVD PSLIDSFLRF LRHGSDDIIR  60
   61 QKLNNYRKGS INGKNKCKEF LKQELYPNWQ IRNNIISFCE KEAAEMKNET DQQCGNNKKT 120
  121 TAEPLIDARI DPYAARERAE KQEAQYKDWT KVTEWVANNR KIEQILTSTT EGILRQNCEQ 180
  181 NNDYLKEFTQ FCKDNS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits