| Protein: | RTG3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 486 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTG3.
| Description | E-value | Query Range |
Subject Range |
|
|
216.0 | [0..1] | [400..32] |
|
|
215.0 | [0..36] | [392..55] |
|
|
210.0 | [0..36] | [392..265] |
|
|
207.0 | [0..36] | [392..265] |
|
Region A: Residues: [1-276] |
1 11 21 31 41 51
| | | | | |
1 MMNNNESEAE NQRLLDELMN QTKVLQETLD FSLVTPTPHH NDDYKIHGSA YPGGETPAQQ 60
61 HEKLSYINTH NSNDNNNLMG SQARSNSQTP TASTIYEEAE SQSSYLDDMF RTSQGGRPVT 120
121 QNSISSIGQG PLRSSYSMAY DSPVDRAMNT PLQQQEGLKA ELPHDFLFQH GTDDTMYNLT 180
181 DDLSSSLSSS INSDMMTPNT YSSSFSYNPQ SLGPASVSST YSPKVRSPSS SFRAGSFLSS 240
241 SFRHGSINTP RTRHTSISSN MTENIGPGSV PKILGG
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [277-422] |
1 11 21 31 41 51
| | | | | |
1 LTSDEKLRRK REFHNAVERR RRELIKQKIK ELGQLVPPSL LNYDDLGKQI KPNKGIILDR 60
61 TVEYLQYLAE ILEIQARKKK ALLAKIKELE EKKSSVAALS PFTNNHHASS GQNNSENSEE 120
121 RIIDIRSVPN ALMNEQNSKA ELHNWE
|
| Detection Method: | |
| Confidence: | 40.64593 |
| Match: | 1am9A |
| Description: | SREBP-1a |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [423-486] |
1 11 21 31 41 51
| | | | | |
1 PPLYDSVGNH NHAGTMESHP HTNIHEELKE FLSGDLIEAE DNAKLMFGDD NSNPADYLLE 60
61 FGSG
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.363 | a.60.15 | Description not found. |
| View | Download | 0.251 | b.107.1 | Urease metallochaperone UreE, N-terminal domain |
| View | Download | 0.207 | a.4.12 | TrpR-like |
| View | Download | 0.207 | a.4.12 | TrpR-like |
| View | Download | 0.206 | a.20.1 | PGBD-like |
| View | Download | 0.204 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
