YRC Public Data Repository - Protein Structure Prediction

Protein:	SFT2
Organism:	Saccharomyces cerevisiae
Length:	215 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SFT2.

Description	E-value	Query Range	Subject Range
gi\|207347935 - gi\|207347935\|gb\|EDZ73953.1\| YBL102Wp-like protein [Saccharomyces cerevisiae AWRI1631] SFT2 - Non-essential tetra-spanning membrane protein found mostly in the late Golgi, can suppress some sed5... gi\|151946299 - gi\|151946299\|gb\|EDN64521.1\| suppressor of sedfive ts [Saccharomyces cerevisiae YJM789] SFT2_YEAST - Protein transport protein SFT2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFT2 PE=1...	1.0E-68	[1..215]	[1..215]
gi\|15241114, gi\|... - gi\|9758622\|dbj\|BAB09284.1\| unnamed protein product [Arabidopsis thaliana], gi\|15241114\|ref\|NP_200413...	1.0E-49	[20..208]	[36..223]
sft2 - Golgi transport protein Sft2 SFT2_SCHPO - Protein transport protein sft2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sft2 PE=3 S...	9.0E-45	[22..207]	[6..198]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	4.0E-42	[20..209]	[143..379]
gi\|6594627 - gi\|6594627\|gb\|AAF18564.1\| pRGR1 [Homo sapiens]	7.0E-38	[71..207]	[43..178]
SFT2B_MOUSE - Vesicle transport protein SFT2B OS=Mus musculus GN=Sft2d2 PE=1 SV=1	2.0E-33	[71..202]	[24..154]
gi\|85014305, gi\|... - gi\|85014305\|ref\|XP_955648.1\| syntaxin [Encephalitozoon cuniculi GB-M1], gi\|19171342\|emb\|CAD27067.1\| ... gi\|19173216 - ref\|NP_597019.1\| SYNTAXIN-LIKE PROTEIN [Encephalitozoon cuniculi]	1.0E-28	[73..205]	[38..168]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEEPPSDQV NSLRDSLNRW NQTRQQNSQG FNESAKTLFS SWADSLNTRA QDIYQTLPVS  60
   61 RQDLVQDQEP SWFQLSRTER MVLFVCFLLG ATACFTLCTF LFPVLAAKPR KFGLLWTMGS 120
  121 LLFVLAFGVL MGPLAYLKHL TARERLPFSM FFFATCFMTI YFAAFSKNTV LTITCALLEL 180
  181 VAVIYYAISY FPFGATGLRM LSSAGVNSAR GVLRI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [66-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDQEPSWFQL SRTERMVLFV CFLLGATACF TLCTFLFPVL AAKPRKFGLL WTMGSLLFVL  60
   61 AFGVLMGPLA YLKHLTARER LPFSMFFFAT CFMTIYFAAF SKNTVLTITC ALLELVAVIY 120
  121 YAISYFPFGA TGLRMLSSAG VNSARGVLRI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	53.045757
Match:	PF07770.3
Description:	No description for PF07770.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits