YRC Public Data Repository - Protein Structure Prediction

Protein:	YBL095W
Organism:	Saccharomyces cerevisiae
Length:	270 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBL095W.

Description	E-value	Query Range	Subject Range
gi\|207347925 - gi\|207347925\|gb\|EDZ73945.1\| YBL095Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190408914 - gi\|190408914\|gb\|EDV12179.1\| hypothetical protein SCRG_03053 [Saccharomyces cerevisiae RM11-1a] YBL095W - Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purifi... MRX3_YEAST - MIOREX complex component 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRX3 PE=1 SV=... gi\|151946305 - gi\|151946305\|gb\|EDN64527.1\| conserved protein [Saccharomyces cerevisiae YJM789]	0.0	[1..270]	[1..270]
SPAPB2B4.06 - conserved fungal protein gi\|19114804 - gi\|19114804\|ref\|NP_593892.1\| hypothetical protein SPAPB2B4.06 [Schizosaccharomyces pombe 972h-]	2.0E-50	[53..224]	[60..227]
gi\|18490449 - gi\|18490449\|gb\|AAH22612.1\| Them4 protein [Mus musculus]	2.0E-38	[83..221]	[48..188]
YBJ5_CANAL - Uncharacterized protein in WHS11 5'region (Fragment) OS=Candida albicans PE=2 SV=1	2.0E-35	[120..269]	[5..134]
gi\|119700214 - gi\|119700214\|gb\|EAX12241.1\| conserved hypothetical protein [Mycobacterium tuberculosis F11] gi\|121491916, gi... - gi\|121636269\|ref\|YP_976492.1\| hypothetical protein BCG_0394c [Mycobacterium bovis BCG str. Pasteur 1... gi\|254230717, gi... - gi\|254230717\|ref\|ZP_04924044.1\| conserved hypothetical protein [Mycobacterium tuberculosis C], gi\|19... gi\|224988741, gi... - gi\|224988741\|ref\|YP_002643428.1\| hypothetical protein JTY_0364 [Mycobacterium bovis BCG str. Tokyo 1... gi\|148504274, gi... - gi\|148660122\|ref\|YP_001281645.1\| hypothetical protein MRA_0365 [Mycobacterium tuberculosis H37Ra], g... gi\|215425573 - gi\|215425573\|ref\|ZP_03423492.1\| hypothetical protein MtubT9_03978 [Mycobacterium tuberculosis T92] gi\|218751985 - gi\|218751985\|ref\|ZP_03530781.1\| hypothetical protein MtubG1_00430 [Mycobacterium tuberculosis GM 150... gi\|7476322 - pir\|\|E70575 hypothetical protein Rv0356c - Mycobacterium tuberculosis (strain H37RV) gi\|31791533, gi\|... - gi\|31791533\|ref\|NP_854026.1\| hypothetical protein Mb0363c [Mycobacterium bovis AF2122/97], gi\|316171... gi\|2094837, gi\|1... - gi\|2094837\|emb\|CAB08564.1\| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv], gi\|156... gi\|254817476 - gi\|254817476\|ref\|ZP_05222477.1\| hypothetical protein MtubKZN_17527 [Mycobacterium tuberculosis KZN 4... gi\|255098442 - gi\|255098442\|ref\|ZP_05327920.1\| hypothetical protein MtubK_20265 [Mycobacterium tuberculosis KZN 605... gi\|253797282, gi... - gi\|253797282\|ref\|YP_003030283.1\| hypothetical protein TBMG_00360 [Mycobacterium tuberculosis KZN 143... gi\|254549299 - gi\|254549299\|ref\|ZP_05139746.1\| hypothetical protein Mtube_02368 [Mycobacterium tuberculosis '98-R60...	9.0E-33	[65..233]	[35..211]
gi\|148821552, gi... - gi\|76785936\|ref\|ZP_00773099.1\| COG2050: Uncharacterized protein, possibly involved in aromatic compo... gi\|81255778 - gi\|81255778\|ref\|ZP_00880246.1\| COG2050: Uncharacterized protein, possibly involved in aromatic compo... gi\|15839742, gi\|... - gi\|15839742\|ref\|NP_334779.1\| hypothetical protein MT0372 [Mycobacterium tuberculosis CDC1551], gi\|13... gi\|215402104 - gi\|215402104\|ref\|ZP_03414285.1\| hypothetical protein Mtub0_00110 [Mycobacterium tuberculosis 02_1987... gi\|167968494 - gi\|167968494\|ref\|ZP_02550771.1\| hypothetical protein MtubH3_10861 [Mycobacterium tuberculosis H37Ra] gi\|215429176 - gi\|215429176\|ref\|ZP_03427095.1\| hypothetical protein MtubE_00410 [Mycobacterium tuberculosis EAS054] gi\|215409864 - gi\|215409864\|ref\|ZP_03418672.1\| hypothetical protein Mtub9_00755 [Mycobacterium tuberculosis 94_M424... gi\|215444441 - gi\|215444441\|ref\|ZP_03431193.1\| hypothetical protein MtubT_00417 [Mycobacterium tuberculosis T85]	1.0E-32	[65..233]	[30..206]
gi\|15827057 - gi\|15827057\|ref\|NP_301320.1\| hypothetical protein ML0279 [Mycobacterium leprae TN] gi\|219932642, gi... - gi\|221229535\|ref\|YP_002502951.1\| hypothetical protein MLBr_00279 [Mycobacterium leprae Br4923], gi\|2... gi\|3129992, gi\|2... - gi\|3129992\|emb\|CAA18943.1\| hypothetical protein MLCB4.22c [Mycobacterium leprae], pir\|\|G86943 conser...	3.0E-31	[64..218]	[38..199]

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Predicted Domain #1

Region A:
Residues: [1-60]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRTIPFLFK LVNRAVILPT AGFTLGVGAF VKAWPDDAGV LSLNDPQTPA ELISATKSRQ  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.531	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.531	a.140.2	SAP domain
View	Download	0.533	a.4.1	Homeodomain-like
View	Download	0.525	a.4.1	Homeodomain-like
View	Download	0.511	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.469	a.64.2	Bacteriocin AS-48
View	Download	0.409	a.64.2	Bacteriocin AS-48
View	Download	0.403	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.401	a.144.1	PABC (PABP) domain
View	Download	0.389	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.369	a.4.1	Homeodomain-like
View	Download	0.365	a.4.1	Homeodomain-like
View	Download	0.359	a.4.1	Homeodomain-like
View	Download	0.341	d.76.1	GYF domain
View	Download	0.339	a.28.3	Retrovirus capsid protein C-terminal domain
View	Download	0.338	a.164.1	C-terminal domain of DFF45/ICAD (DFF-C domain)
View	Download	0.338	d.68.3	SirA-like
View	Download	0.320	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.318	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.315	d.68.3	SirA-like
View	Download	0.312	a.3.1	Cytochrome c
View	Download	0.311	a.65.1	Annexin
View	Download	0.311	a.30.1	ROP protein
View	Download	0.308	d.68.5	C-terminal domain of ProRS
View	Download	0.300	a.65.1	Annexin
View	Download	0.289	a.64.1	Saposin
View	Download	0.286	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.286	a.64.2	Bacteriocin AS-48
View	Download	0.285	a.28.3	Retrovirus capsid protein C-terminal domain
View	Download	0.279	a.64.1	Saposin
View	Download	0.274	a.140.2	SAP domain
View	Download	0.270	a.159.1	Protein serine/threonine phosphatase 2C, C-terminal domain
View	Download	0.270	a.159.1	Protein serine/threonine phosphatase 2C, C-terminal domain
View	Download	0.268	a.4.1	Homeodomain-like
View	Download	0.253	a.28.3	Retrovirus capsid protein C-terminal domain
View	Download	0.244	a.28.1	ACP-like
View	Download	0.240	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.237	a.65.1	Annexin
View	Download	0.233	d.39.1	Dynein light chain 8 (DLC8)
View	Download	0.230	a.4.1	Homeodomain-like
View	Download	0.229	a.64.2	Bacteriocin AS-48
View	Download	0.226	a.5.7	4-hydroxy-2-oxovalerate aldolase DmpG, communication domain
View	Download	0.222	a.4.1	Homeodomain-like
View	Download	0.215	a.64.2	Bacteriocin AS-48
View	Download	0.211	a.64.2	Bacteriocin AS-48
View	Download	0.209	f.14.1	Voltage-gated potassium channels

Predicted Domain #2

Region A:
Residues: [61-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PMELQRVDIL AQIEKSEVYN KLAQDEKMHH VLFSEKIPSG HREYHVGQGL LFGKGKLEID  60
   61 PLVFHDVNHG ELTVIYHLGA ELGNRDGNVH KGLLSLLLDE ALCYCGFPLL PSKRGVTARL 120
  121 SLEFFEDIPV DTTIILKANV KEIKGRKCII EGHLEQFPLE VSSRNGTRSW NLPHIWGFNH 180
  181 KQEMAKKFAK ANCILVEPTW FKYFKWLDMF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits