YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS8B, RPS8A
Organism:	Saccharomyces cerevisiae
Length:	200 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS8B, RPS8A.

Description	E-value	Query Range	Subject Range
RS8_MOUSE - 40S ribosomal protein S8 OS=Mus musculus GN=Rps8 PE=1 SV=2 RS8_BOVIN - 40S ribosomal protein S8 OS=Bos taurus GN=RPS8 PE=2 SV=3 RS8_RAT - 40S ribosomal protein S8 OS=Rattus norvegicus GN=Rps8 PE=1 SV=2 ENSCJAT00000008064 - null gi\|73977187, gi\|... - gi\|73977187\|ref\|XP_862327.1\| PREDICTED: similar to ribosomal protein S8 isoform 8 [Canis familiaris]... tr\|G3GYR9\|G3GYR9... - 40S ribosomal protein S8 OS=Cricetulus griseus GN=I79_002981 PE=3 SV=1 RS8_MACFA - 40S ribosomal protein S8 OS=Macaca fascicularis GN=RPS8 PE=2 SV=3 RPS8 - ribosomal protein S8 gi\|109003617 - gi\|109003617\|ref\|XP_001099080.1\| PREDICTED: similar to ribosomal protein S8 isoform 2 [Macaca mulatt... gi\|114681875, gi... - gi\|55644275\|ref\|XP_511118.1\| PREDICTED: similar to ribosomal protein S8 [Pan troglodytes], gi\|555862... gi\|55715968 - gb\|AAH86200.1\| Unknown (protein for MGC:98675) [Xenopus laevis]	2.0E-89	[1..200]	[1..206]
RS8_ICTPU - 40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3	8.0E-89	[1..200]	[1..206]
RS8_SPOFR - 40S ribosomal protein S8 OS=Spodoptera frugiperda GN=RpS8 PE=2 SV=1	5.0E-85	[1..200]	[1..206]
RS8_ORYSA - (P49199) 40S ribosomal protein S8 gi\|968902 - gi\|968902\|dbj\|BAA07207.1\| ribosomal protein S8 [Oryza sativa Japonica Group]	7.0E-82	[1..200]	[1..214]
rps802 - 40S ribosomal protein S8 RS8B_SCHPO - 40S ribosomal protein S8-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rps802 PE=1 SV=...	1.0E-81	[1..200]	[1..200]
rps-8 - 40S ribosomal protein S8 status:Confirmed UniProt:P48156 protein_id:AAA81485.1	3.0E-81	[1..200]	[1..206]
RPS8B, RPS8A - Protein component of the small (40S) ribosomal subunit; identical to Rps8Ap and has similarity to ra... gi\|151946325 - gi\|151946325\|gb\|EDN64547.1\| ribosomal protein S8A [Saccharomyces cerevisiae YJM789] RS8A_YEAST, RS8B... - 40S ribosomal protein S8-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPS8B PE=1 SV... gi\|190408894 - gi\|190408894\|gb\|EDV12159.1\| ribosomal protein S8B [Saccharomyces cerevisiae RM11-1a] gi\|207345893 - gi\|207345893\|gb\|EDZ72566.1\| YER102Wp-like protein [Saccharomyces cerevisiae AWRI1631]	7.0E-81	[1..200]	[1..200]
RS82_ARATH - 40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1	1.0E-80	[1..193]	[1..196]
RS8_MAIZE - 40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2	6.0E-80	[1..200]	[1..215]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGISRDSRHK RSATGAKRAQ FRKKRKFELG RQPANTKIGA KRIHSVRTRG GNKKYRALRI  60
   61 ETGNFSWASE GISKKTRIAG VVYHPSNNEL VRTNTLTKAA IVQIDATPFR QWFEAHYGQT 120
  121 LGKKKNVK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	83.60206
Match:	PF01201
Description:	Ribosomal protein S8e

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [129-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEETVAKSKN AERKWAARAA SAKIESSVES QFSAGRLYAC ISSRPGQSGR CDGYILEGEE  60
   61 LAFYLRRLTA KK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits