YRC Public Data Repository - Protein Structure Prediction

Protein:	KTI11
Organism:	Saccharomyces cerevisiae
Length:	82 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KTI11.

Description	E-value	Query Range	Subject Range
gi\|15226643, gi\|... - gi\|5306242\|gb\|AAD41975.1\| unknown protein [Arabidopsis thaliana], pir\|\|F84534 hypothetical protein A...	129.0	[0..3]	[75..2]
gi\|62738697 - gi\|62738697\|pdb\|1YOP\|A Chain A, The Solution Structure Of Kti11p	119.0	[0..1]	[82..2]
SPAC8F11.02c - diphthamide biosynthesis protein Dph3 DPH3_SCHPO - Diphthamide biosynthesis protein 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dph3 PE...	113.0	[0..1]	[74..1]
gi\|109503034, gi... - gi\|198442846\|ref\|NP_001128322.1\| zinc finger, CSL domain containing 2 [Rattus norvegicus], gi\|109503...	111.0	[0..3]	[71..4]
gi\|159163322, gi... - gi\|75765322\|pdb\|1WGE\|A Chain A, Solution Structure Of The Mouse Desr1, gi\|159163322\|pdb\|1WGE\|A Chain...	111.0	[0..3]	[71..11]
gi\|50732744 - gi\|50732744\|ref\|XP_418742.1\| PREDICTED: similar to RIKEN cDNA 2610018L09 [Gallus gallus]	110.0	[0..3]	[79..4]
DPH3_CRIGR - DPH3 homolog OS=Cricetulus griseus GN=DPH3 PE=3 SV=1 ENSOCUP000000136... - pep:novel chromosome:oryCun2:14:2273985:2276494:-1 gene:ENSOCUG00000015862 transcript:ENSOCUT0000001...	109.0	[0..3]	[71..4]
DPH3_KLULA - Diphthamide biosynthesis protein 3 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 ... DPH3_KLULA - Diphthamide biosynthesis protein 3 OS=Kluyveromyces lactis GN=DPH3 PE=3 SV=1	109.0	[0..1]	[81..1]
gi\|109050692, gi... - gi\|109050695\|ref\|XP_001083944.1\| PREDICTED: zinc finger, CSL-type containing 2 isoform 2 [Macaca mul... DPH3_PONPY - DPH3 homolog - Pongo pygmaeus (Orangutan) CCDS2629.1_1 - null DPH3_PONAB - DPH3 homolog OS=Pongo abelii GN=DPH3 PE=3 SV=1 ENSCJAT00000006850 - null DPH3 - DPH3, KTI11 homolog (S. cerevisiae) DPH3_MACFA - DPH3 homolog OS=Macaca fascicularis GN=DPH3 PE=3 SV=1	109.0	[0..3]	[71..4]

Back

Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTYDEIEIE DMTFEPENQM FTYPCPCGDR FQIYLDDMFE GEKVAVCPSC SLMIDVVFDK  60
   61 EDLAEYYEEA GIHPPEPIAA AA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.30103
Match:	1ywsA
Description:	Solution structure of YBL071w-A from Saccharomyces cerevisiae.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits