YRC Public Data Repository - Protein Structure Prediction

Protein:	YBL059W
Organism:	Saccharomyces cerevisiae
Length:	193 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBL059W.

Description	E-value	Query Range	Subject Range
gi\|2196469 - gi\|2196469\|gb\|AAB64664.1\| Yer093c-ap [Saccharomyces cerevisiae]	143.0	[0..61]	[153..7]
gi\|49643998 - gi\|49643998\|emb\|CAG99950.1\| KLLA0E20153p [Kluyveromyces lactis] AIM11_KLULA - Altered inheritance of mitochondria protein 11 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 ...	115.0	[0..50]	[183..7]
gi\|44981136 - gi\|44981136\|gb\|AAS50988.1\| ABR215Cp [Ashbya gossypii ATCC 10895] gi\|44981136, gi\|... - gi\|45185447\|ref\|NP_983164.1\| ABR215Cp [Ashbya gossypii ATCC 10895], gi\|44981136\|gb\|AAS50988.1\| ABR21...	82.0	[0..50]	[158..36]
AIM11_DEBHA - Altered inheritance of mitochondria protein 11 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767... gi\|49652362 - gi\|49652362\|emb\|CAG84654.1\| DEHA2A08514p [Debaryomyces hansenii]	82.0	[0..60]	[183..24]
gi\|50285057, gi\|... - gi\|50285057\|ref\|XP_444957.1\| hypothetical protein CAGL0A04367g [Candida glabrata CBS138], gi\|4952425... gi\|49524259 - gi\|49524259\|emb\|CAG57850.1\| unnamed protein product [Candida glabrata]	80.0	[0..62]	[166..10]
AIM11_CANAW - Altered inheritance of mitochondria protein 11 OS=Candida albicans (strain WO-1) GN=AIM11 PE=3 SV=1 AIM11_CANAL - Altered inheritance of mitochondria protein 11 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) G... orf19.6156 - orf19.6156 CGDID:CAL0006048 Assembly 19, Contig19-2401 (4121, 3624) CDS, reverse complemented, trans...	79.0	[0..61]	[183..18]
gi\|49651617 - gi\|49651617\|emb\|CAG78558.1\| YALI0F22367p [Yarrowia lipolytica] AIM11_YARLI - Altered inheritance of mitochondria protein 11 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=A...	78.0	[0..50]	[183..13]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLDAQRFFN RSFSINVICE LKHNVNTRRK FEIKDWPTIM LVSRNDKPKI SSEEVTHFID  60
   61 DYKKRRKTQM TRFFGITIFT LITCRIAMKK MITAKVPLNT FQANYASRTQ TITHTQKSLA 120
  121 GSLLAATGMT LGIFGMGITG TCWSWDVSSF QELKQRLERR ANNEFVVTNM PLDKRSQQVV 180
  181 DSLVKTHNSS LCK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.824	a.29.5	alpha-ketoacid dehydrogenase kinase, N-terminal domain
View	Download	0.339	a.7.1	Spectrin repeat
View	Download	0.318	f.13.1	Family A G protein-coupled receptor-like
View	Download	0.318	f.13.1	Family A G protein-coupled receptor-like
View	Download	0.266	a.47.1	STAT
View	Download	0.266	a.47.1	STAT
View	Download	0.261	a.238.1	Description not found.
View	Download	0.243	c.2.1	NAD(P)-binding Rossmann-fold domains

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits