YRC Public Data Repository - Protein Structure Prediction

Protein:	CMC2
Organism:	Saccharomyces cerevisiae
Length:	109 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CMC2.

Description	E-value	Query Range	Subject Range
gi\|49643999 - gi\|49643999\|emb\|CAG99951.1\| KLLA0E20175p [Kluyveromyces lactis] gi\|49643999, gi\|... - gi\|50309705\|ref\|XP_454864.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643999\|emb\|CAG9995...	128.0	[0..1]	[102..1]
gi\|44981137, gi\|... - gi\|45185448\|ref\|NP_983165.1\| ABR216Wp [Ashbya gossypii ATCC 10895], gi\|44981137\|gb\|AAS50989.1\| ABR21... gi\|44981137 - gi\|44981137\|gb\|AAS50989.1\| ABR216Wp [Ashbya gossypii ATCC 10895]	115.0	[0..1]	[99..1]
gi\|49651616 - gi\|49651616\|emb\|CAG78557.1\| YALI0F22363p [Yarrowia lipolytica] gi\|50556676, gi\|... - gi\|50556676\|ref\|XP_505746.1\| YALI0F22363p [Yarrowia lipolytica], gi\|49651616\|emb\|CAG78557.1\| YALI0F2...	75.0	[0..1]	[94..1]
gi\|49524260, gi\|... - gi\|50285059\|ref\|XP_444958.1\| hypothetical protein CAGL0A04389g [Candida glabrata CBS138], gi\|4952426...	74.0	[0..32]	[99..1]
gi\|49653920 - gi\|49653920\|emb\|CAG86330.1\| DEHA2C13244p [Debaryomyces hansenii] gi\|49653920, gi\|... - gi\|50419455\|ref\|XP_458254.1\| hypothetical protein DEHA0C14234g [Debaryomyces hansenii CBS767], gi\|49...	66.0	[0..1]	[101..1]
gi\|134089244, gi... - gi\|50257726\|gb\|EAL20427.1\| hypothetical protein CNBE3480 [Cryptococcus neoformans var. neoformans B-... gi\|57227147, gi\|... - gi\|58267514\|ref\|XP_570913.1\| hypothetical protein CNE03470 [Cryptococcus neoformans var. neoformans ...	52.0	[0..8]	[83..9]
gi\|49084504, gi\|... - gi\|67516055\|ref\|XP_657913.1\| hypothetical protein AN0309.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	49.0	[0..1]	[73..1]
gi\|85114381 - gi\|85114381\|ref\|XP_964685.1\| hypothetical protein NCU09250 [Neurospora crassa OR74A] gi\|32422397, gi\|... - gi\|38567001\|emb\|CAE76301.1\| conserved hypothetical protein [Neurospora crassa], gi\|32422397\|ref\|XP_3...	48.0	[0..1]	[78..1]
gi\|114193576, gi... - gi\|115396736\|ref\|XP_001214007.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	48.0	[0..1]	[82..1]
gi\|116057142 - gi\|116057142\|emb\|CAL51569.1\| CNPV141 HAL3-like domain protein (ISS) [Ostreococcus tauri]	47.0	[0..1]	[63..1]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPQLEAERF HSCLDFINAL DKCHQKEYYK RIFGLCNNEK DALNKCLKEA SLNNKKRAVI  60
   61 ESRIKRADVE KRWKKIEEEE YGEDAILKTI LDRQYAKKKQ ESDNDANSK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	26.091515
Match:	PF08583.1
Description:	No description for PF08583.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits