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View Structure Prediction Details

Protein: SEC17
Organism: Saccharomyces cerevisiae
Length: 292 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEC17.

Description E-value Query
Range
Subject
Range
gi|25534507 - pir||AH2108 hypothetical protein all2423 [imported] - Nostoc sp. (strain PCC 7120)
gi|17229915, gi|... - gi|17229915|ref|NP_486463.1| hypothetical protein all2423 [Nostoc sp. PCC 7120], gi|17131515|dbj|BAB...
3.0E-44 [5..270] [339..596]
SNAA_RAT - Alpha-soluble NSF attachment protein OS=Rattus norvegicus GN=Napa PE=1 SV=2
2.0E-41 [2..291] [8..294]
SNAA_MOUSE - Alpha-soluble NSF attachment protein OS=Mus musculus GN=Napa PE=1 SV=1
2.0E-41 [2..291] [8..294]
SNAA_BOVIN - Alpha-soluble NSF attachment protein OS=Bos taurus GN=NAPA PE=1 SV=1
4.0E-41 [2..291] [8..294]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
5.0E-40 [44..292] [326..573]
SEC17_YEAST - Alpha-soluble NSF attachment protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC...
SEC17 - Peripheral membrane protein required for vesicular transport between ER and Golgi, the 'priming' ste...
gi|151946345 - gi|151946345|gb|EDN64567.1| secretory subuint [Saccharomyces cerevisiae YJM789]
gi|190408875 - gi|190408875|gb|EDV12140.1| alpha-soluble NSF attachment protein [Saccharomyces cerevisiae RM11-1a]
3.0E-39 [1..292] [1..292]
Snap-PA - The gene Soluble NSF attachment protein is referred to in FlyBase by the symbol Dmel\Snap (CG6625, F...
gi|220944714, gi... - gi|220954654|gb|ACL89870.1| Snap-PA [synthetic construct], gi|220944714|gb|ACL84900.1| Snap-PA [synt...
3.0E-39 [3..289] [7..290]

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Predicted Domain #1
Region A:
Residues: [1-157]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDPVELLKR AEKKGVPSSG FMKLFSGSDS YKFEEAADLC VQAATIYRLR KELNLAGDSF  60
   61 LKAADYQKKA GNEDEAGNTY VEAYKCFKSG GNSVNAVDSL ENAIQIFTHR GQFRRGANFK 120
  121 FELGEILEND LHDYAKAIDC YELAGEWYAQ DQSVALS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1550.0
Match: 1qqeA_
Description: Vesicular transport protein sec17
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
soluble NSF attachment protein activity 5.88260989493554 bayes_pls_golite062009
binding 2.09193012129784 bayes_pls_golite062009
protein binding 1.52807685989528 bayes_pls_golite062009
signal sequence binding 1.13935627118933 bayes_pls_golite062009
peroxisome targeting sequence binding 0.158175726439206 bayes_pls_golite062009
syntaxin binding 0.0598606763736398 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [158-292]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NKCFIKCADL KALDGQYIEA SDIYSKLIKS SMGNRLSQWS LKDYFLKKGL CQLAATDAVA  60
   61 AARTLQEGQS EDPNFADSRE SNFLKSLIDA VNEGDSEQLS EHCKEFDNFM RLDKWKITIL 120
  121 NKIKESIQQQ EDDLL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1550.0
Match: 1qqeA_
Description: Vesicular transport protein sec17
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle