| Protein: | APL3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1025 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APL3.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [19..1022] | [10..937] |
|
|
0.0 | [19..1022] | [10..937] |
|
|
0.0 | [19..1022] | [10..938] |
|
|
0.0 | [1..1025] | [1..1025] |
|
|
0.0 | [19..1022] | [10..976] |
|
|
0.0 | [19..1022] | [9..938] |
|
Region A: Residues: [1-135] |
1 11 21 31 41 51
| | | | | |
1 MDRKKTLINS SVSNNNSTIK GLQLFIADLR SAQQAQEQEK RIQSEIVKIK QHFDAAKKKQ 60
61 GNHDRLGGYQ RKKYVAKLAY IYITSNTTKL NEILFGLEQT VELLKSSIFS EKFIGYMTLE 120
121 LLYERSEVVA KVNDE
|
| Detection Method: |  |
| Confidence: | 608.0 |
| Match: | 1gw5A_ |
| Description: | Adaptin alpha C subunit N-terminal fragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [136-219] |
1 11 21 31 41 51
| | | | | |
1 VNYQLMKDLS SSDDNFVMLA LNFVGVVGEL TNRLAYNDDI TTGVFKILRS PTSSIYLKKK 60
61 SALSFLALLK SNHSILTEDL QRKQ
|
| Detection Method: | |
| Confidence: | 608.0 |
| Match: | 1gw5A_ |
| Description: | Adaptin alpha C subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [220-381] |
1 11 21 31 41 51
| | | | | |
1 LWIQRILSLL DDTENYRLTL ATIPLIEFIA KYIDPSYCTR LLPQLTEILY NCVVVGTSRS 60
61 SDNQFPLEYT FANMPNPWLI TKVVSLLSIL IASPTERDSG SLLQTNNIDN ELLNKLRKCV 120
121 SVAIELGTRQ AQDPMERIVQ NTVLFSLINF ASKLDPSDEA IS
|
| Detection Method: | |
| Confidence: | 608.0 |
| Match: | 1gw5A_ |
| Description: | Adaptin alpha C subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [382-457] |
1 11 21 31 41 51
| | | | | |
1 NSVTALCSLL TSKEINIRYL TLDSLVKLCS SSGKPAIDAV RYKNLDMIFH LLNTERDSSI 60
61 VRKVVDLLYT FTDVEN
|
| Detection Method: | |
| Confidence: | 608.0 |
| Match: | 1gw5A_ |
| Description: | Adaptin alpha C subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [458-576] |
1 11 21 31 41 51
| | | | | |
1 VKIIVDGLLQ YILSPKNLAE PQIKSDIAVK IAILTEKYAT DINWFVIISL QLLSLTSNTT 60
61 INDDEIWQRL CQIVVNNPSL HRITCERLVD YLCKKQASEA IIKAAAFLLG EYSSLITDR
|
| Detection Method: | |
| Confidence: | 608.0 |
| Match: | 1gw5A_ |
| Description: | Adaptin alpha C subunit N-terminal fragment |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [577-743] |
1 11 21 31 41 51
| | | | | |
1 ISSANLFTLF AEKYFSAPNV AKAMILTTMI KLYKTSPEIG SNVIKFFQLE LNSLDIELQT 60
61 RSFEYLNIIQ LAKVNGNTDI LQILFEPMPP FNSKSNPLLK RLGSLPASAG STTLINTPSE 120
121 ASSSTPDLLS KRANSSRSIM VPMPPPSRRN TIDDVNSKIS SSEDFSG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.661 | 0.944 | vesicle-mediated transport | a.118.9 | ENTH/VHS domain |
|
Region A: Residues: [744-888] |
1 11 21 31 41 51
| | | | | |
1 KDSYYSRQIL APNWREGFTR MISHKQGVLF TSSLMKVFYR ITTPDAQQPY VFHISLAFIN 60
61 LTEWEITGLS TQIIPSKTQG NPEYLIMNIN TPSTATIGPH KRAEQSYEVS IRKPFDVEDS 120
121 PILAIHFKCG GSTNTINLKT AIGMT
|
| Detection Method: | |
| Confidence: | 120.522879 |
| Match: | 1qtsA_ |
| Description: | Alpa-adaptin AP2 ear domain, N-terminal subdomain; Alpa-adaptin AP2, C-terminal subdomain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [889-1025] |
1 11 21 31 41 51
| | | | | |
1 TTLISSDVNP SMHLNLAQFI SRWKTLSDAL GKEGEYQKSG IKLNKDFRKV ETISLEDGLL 60
61 LLTQTVKRLG FDIVDQTSVR STLFVSGIIH TKSEGNFGCL MKIQYQVNGT VNVTCKTTTA 120
121 GPLAKYIVEC IKNVLTK
|
| Detection Method: | |
| Confidence: | 120.522879 |
| Match: | 1qtsA_ |
| Description: | Alpa-adaptin AP2 ear domain, N-terminal subdomain; Alpa-adaptin AP2, C-terminal subdomain |
| Matching Structure (courtesy of the PDB): |
|
