YRC Public Data Repository - Protein Structure Prediction

Protein:	YBL029C-A
Organism:	Saccharomyces cerevisiae
Length:	94 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBL029C-A.

Description	E-value	Query Range	Subject Range
gi\|49643641 - gi\|49643641\|emb\|CAG99593.1\| KLLA0E12387p [Kluyveromyces lactis] gi\|50309001, gi\|... - gi\|50309001\|ref\|XP_454506.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643641\|emb\|CAG9959...	125.0	[0..1]	[90..1]
gi\|49525460, gi\|... - gi\|50287447\|ref\|XP_446153.1\| unnamed protein product [Candida glabrata], gi\|49525460\|emb\|CAG59077.1\|... gi\|49525460 - gi\|49525460\|emb\|CAG59077.1\| unnamed protein product [Candida glabrata]	119.0	[0..3]	[89..4]
gi\|45190785, gi\|... - gi\|45190785\|ref\|NP_985039.1\| AER182Wp [Ashbya gossypii ATCC 10895], gi\|44983827\|gb\|AAS52863.1\| AER18... gi\|44983827 - gi\|44983827\|gb\|AAS52863.1\| AER182Wp [Ashbya gossypii ATCC 10895]	100.0	[0..4]	[89..5]
gi\|50545639, gi\|... - gi\|50545639\|ref\|XP_500358.1\| hypothetical protein [Yarrowia lipolytica], gi\|49646224\|emb\|CAG82572.1\|...	71.0	[0..22]	[94..35]
gi\|50420357, gi\|... - gi\|50420357\|ref\|XP_458712.1\| hypothetical protein DEHA0D06435g [Debaryomyces hansenii CBS767], gi\|49... gi\|49654379 - gi\|49654379\|emb\|CAG86854.1\| DEHA2D05632p [Debaryomyces hansenii]	54.0	[0..1]	[72..1]
gi\|169616722, gi... - gi\|169616722\|ref\|XP_001801776.1\| hypothetical protein SNOG_11536 [Phaeosphaeria nodorum SN15], gi\|11...	45.0	[0..3]	[73..2]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFIPIVCGM KSFDSSYDTV PGHQNLYCPN CHNYSVGPIK RKEFFTIWFI PLVPVFWGKQ  60
   61 LHCPICNWRQ DFKNDEQLNK VIQEQQNLRQ KQPN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.06
Match:	1ynwB
Description:	Crystal Structure of Vitmain D Receptor and 9-cis Retinoic Acid Receptor DNA-Binding Domains Bound to a DR3 Response Element
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits