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View Structure Prediction Details

Protein: YBL028C
Organism: Saccharomyces cerevisiae
Length: 106 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBL028C.

Description E-value Query
Range
Subject
Range
gi|50287439, gi|... - gi|50287439|ref|XP_446149.1| unnamed protein product [Candida glabrata], gi|49525456|emb|CAG59073.1|...
gi|49525456 - gi|49525456|emb|CAG59073.1| unnamed protein product [Candida glabrata]
89.0 [0..1] [106..1]
gi|49643644 - gi|49643644|emb|CAG99596.1| KLLA0E12431p [Kluyveromyces lactis]
gi|49643644, gi|... - gi|50309007|ref|XP_454509.1| unnamed protein product [Kluyveromyces lactis], gi|49643644|emb|CAG9959...
85.0 [0..1] [106..1]
gi|45190783, gi|... - gi|45190783|ref|NP_985037.1| AER180Wp [Ashbya gossypii ATCC 10895], gi|44983825|gb|AAS52861.1| AER18...
gi|44983825 - gi|44983825|gb|AAS52861.1| AER180Wp [Ashbya gossypii ATCC 10895]
71.0 [0..1] [106..1]

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Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKSLRASSH LNAKSVKRRG VFQKAVDARE QRISDKLKED LLKQKLEDLK KKEEQGIDMD  60
   61 VDEKKSNEEA PRKKISTSGW RDGRHHTYKK AKLMKQSKKK TSFTRF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.466 a.24.10 Histidine-containing phosphotransfer domain, HPT domain
View Download 0.389 a.24.13 Domain of the SRP/SRP receptor G-proteins
View Download 0.339 a.160.1 Poly(A) polymerase, middle domain
View Download 0.329 a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.297 a.130.1 Chorismate mutase II
View Download 0.297 a.130.1 Chorismate mutase II
View Download 0.296 a.1.1 Globin-like
View Download 0.293 d.150.1 4'-phosphopantetheinyl transferase
View Download 0.293 d.150.1 4'-phosphopantetheinyl transferase
View Download 0.283 f.36.1 Neurotransmitter-gated ion-channel pransmembrane pore
View Download 0.278 a.74.1 Cyclin-like
View Download 0.202 d.54.1 Enolase N-terminal domain-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle