YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL19B, RPL19A
Organism:	Saccharomyces cerevisiae
Length:	189 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL19B, RPL19A.

Description	E-value	Query Range	Subject Range
RPL19 - ribosomal protein L19 RL19_PONPY - 60S ribosomal protein L19 - Pongo pygmaeus (Orangutan) gi\|55645311 - gi\|55645311\|ref\|XP_511450.1\| PREDICTED: similar to Mus musculus ribosomal protein L19 [Pan troglodyt... RL19_MACFA - 60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2 RL19_RAT - 60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1 RL19_MOUSE - 60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=1 SV=1 gi\|149723888 - gi\|149723888\|ref\|XP_001501482.1\| PREDICTED: similar to Mus musculus ribosomal protein L19 [Equus cab... RL19_PONAB - 60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1 ENSCJAT00000016595 - null gi\|60813596, gi\|... - gi\|61362558\|gb\|AAX42243.1\| ribosomal protein L19 [synthetic construct], gi\|61355098\|gb\|AAX41101.1\| r... gi\|126308220 - gi\|126308220\|ref\|XP_001371270.1\| PREDICTED: similar to Mus musculus ribosomal protein L19 [Monodelph... RL19_CANLF - 60S ribosomal protein L19 OS=Canis lupus familiaris GN=RPL19 PE=1 SV=1 RL19_BOVIN - 60S ribosomal protein L19 OS=Bos taurus GN=RPL19 PE=2 SV=1	4.0E-58	[1..186]	[1..186]
gi\|91271, gi\|198... - pir\|\|A36554 ribosomal protein L19 - mouse, gi\|6677773\|ref\|NP_033104.1\| ribosomal protein L19 [Mus mu...	7.0E-58	[1..186]	[1..186]
gi\|194756322, gi... - gi\|194756322\|ref\|XP_001960428.1\| GF11517 [Drosophila ananassae], gi\|190621726\|gb\|EDV37250.1\| GF11517... gi\|190659894, gi... - gi\|194886903\|ref\|XP_001976707.1\| GG19869 [Drosophila erecta], gi\|190659894\|gb\|EDV57107.1\| GG19869 [D... gi\|193910409, gi... - gi\|195121666\|ref\|XP_002005341.1\| GI19130 [Drosophila mojavensis], gi\|193910409\|gb\|EDW09276.1\| GI1913... gi\|195353338, gi... - gi\|195353338\|ref\|XP_002043162.1\| GM11772 [Drosophila sechellia], gi\|194127250\|gb\|EDW49293.1\| GM11772... RpL19-PA, RpL19-PB - The gene Ribosomal protein L19 is referred to in FlyBase by the symbol Dmel\RpL19 (CG2746, FBgn00026... gi\|194145427, gi... - gi\|195383834\|ref\|XP_002050630.1\| GJ22263 [Drosophila virilis], gi\|194145427\|gb\|EDW61823.1\| GJ22263 [... gi\|195586601, gi... - gi\|195586601\|ref\|XP_002083062.1\| GD24903 [Drosophila simulans], gi\|194195071\|gb\|EDX08647.1\| GD24903 ... gi\|220942898, gi... - gi\|220953012\|gb\|ACL89049.1\| RpL19-PA [synthetic construct], gi\|220942898\|gb\|ACL83992.1\| RpL19-PA [sy...	3.0E-56	[1..185]	[1..185]
RL192_ARATH - 60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1	2.0E-55	[1..180]	[1..180]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	2.0E-55	[1..186]	[1..186]
RL19_ICTPU - 60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1	1.0E-54	[1..186]	[1..186]
gi\|16798651 - gi\|16798651\|gb\|AAL29467.1\|AF435591_1 ribosomal protein L19 [Sus scrofa]	3.0E-50	[9..161]	[1..153]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLRTQKRL AASVVGVGKR KVWLDPNETS EIAQANSRNA IRKLVKNGTI VKKAVTVHSK  60
   61 SRTRAHAQSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	538.9691
Match:	1k5yP_
Description:	No description for 1k5yP_ was found.

Predicted Domain #2

Region A:
Residues: [71-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 REGRHSGYGK RKGTREARLP SQVVWIRRLR VLRRLLAKYR DAGKIDKHLY HVLYKESKGN  60
   61 AFKHKRALVE HIIQAKADAQ REKALNEEAE ARRLKNRAAR DRRAQRVAEK RDALLKEDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	538.9691
Match:	1k5yP_
Description:	No description for 1k5yP_ was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits