YRC Public Data Repository - Protein Structure Prediction

Protein:	RFT1
Organism:	Saccharomyces cerevisiae
Length:	574 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RFT1.

Description	E-value	Query Range	Subject Range
gi\|577523 - gi\|577523\|gb\|AAA53537.1\| ORFx	562.0	[0..1]	[428..1]
RFT1_KLULA - Oligosaccharide translocation protein RFT1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DS... RFT1_KLULA - Oligosaccharide translocation protein RFT1 OS=Kluyveromyces lactis GN=RFT1 PE=3 SV=2	542.0	[0..16]	[563..8]
RFT1_CANGA - Oligosaccharide translocation protein RFT1 OS=Candida glabrata GN=RFT1 PE=3 SV=1 RFT1_CANGA - Oligosaccharide translocation protein RFT1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 376...	510.0	[0..14]	[574..5]
RFT1_ASHGO - Oligosaccharide translocation protein RFT1 OS=Ashbya gossypii GN=RFT1 PE=3 SV=1 RFT1_ASHGO - Oligosaccharide translocation protein RFT1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC...	491.0	[0..10]	[565..3]
RFT1 - RFT1 homolog (S. cerevisiae)	477.0	[0..12]	[495..3]
gi\|114587361 - gi\|114587361\|ref\|XP_516524.2\| PREDICTED: RFT1 homolog isoform 4 [Pan troglodytes]	472.0	[0..12]	[495..3]
gi\|109039096 - gi\|109039096\|ref\|XP_001083942.1\| PREDICTED: similar to CG3149-PA isoform 2 [Macaca mulatta]	467.0	[0..12]	[495..3]
gi\|576930, gi\|10... - gi\|576930\|gb\|AAC41661.1\| ORFX [Kluyveromyces lactis], pir\|\|S51564 hypothetical protein X - yeast (Kl...	458.0	[0..16]	[434..8]
RFT1_SCHPO - Oligosaccharide translocation protein rft1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN... rft1 - human RFT1 ortholog	457.0	[0..12]	[503..4]
gi\|73985461 - gi\|73985461\|ref\|XP_533793.2\| PREDICTED: similar to CG3149-PA [Canis familiaris]	456.0	[0..12]	[495..84]

Back

Predicted Domain #1

Region A:
Residues: [1-497]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKNSQLPS TSEQILERST TGATFLMMGQ LFTKLVTFIL NNLLIRFLSP RIFGITAFLE  60
   61 FIQGTVLFFS RDAIRLSTLR ISDSGNGIID DDDEEEYQET HYKSKVLQTA VNFAYIPFWI 120
  121 GFPLSIGLIA WQYRNINAYF ITLPFFRWSI FLIWLSIIVE LLSEPFFIVN QFMLNYAARS 180
  181 RFESIAVTTG CIVNFIVVYA VQQSRYPMGV VTSDIDKEGI AILAFALGKL AHSITLLACY 240
  241 YWDYLKNFKP KKLFSTRLTK IKTRENNELK KGYPKSTSYF FQNDILQHFK KVYFQLCFKH 300
  301 LLTEGDKLII NSLCTVEEQG IYALLSNYGS LLTRLLFAPI EESLRLFLAR LLSSHNPKNL 360
  361 KLSIEVLVNL TRFYIYLSLM IIVFGPANSS FLLQFLIGSK WSTTSVLDTI RVYCFYIPFL 420
  421 SLNGIFEAFF QSVATGDQIL KHSYFMMAFS GIFLLNSWLL IEKLKLSIEG LILSNIINMV 480
  481 LRILYCGVFL NKFHREL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [498-574]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FTDSSFFFNF KDFKTVIIAG STICLLDWWF IGYVKNLQQF VVNVLFAMGL LALILVKERQ  60
   61 TIQSFINKRA VSNSKDV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits