YRC Public Data Repository - Protein Structure Prediction

Protein:	FMT1
Organism:	Saccharomyces cerevisiae
Length:	393 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FMT1.

Description	E-value	Query Range	Subject Range
FMT_ECODH - Methionyl-tRNA formyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=fmt PE=3 SV=1 FMT_ECOHS - Methionyl-tRNA formyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=fmt PE=3 SV=1 gi\|85676754, gi\|... - gi\|89110723\|ref\|AP_004503.1\| 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase [E... EG11268 - 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase / Methionyl-tRNA formyltransfer... FMT_ECOLI - Methionyl-tRNA formyltransferase (EC 2.1.2.9) - Escherichia coli EG11268 - 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase / Methionyl-tRNA formyltransfer... gi\|124498111, gi... - gi\|124532221\|ref\|ZP_01702159.1\| methionyl-tRNA formyltransferase [Escherichia coli B], gi\|124498111\|... gi\|194439996, gi... - gi\|83584646\|ref\|ZP_00923313.1\| COG0223: Methionyl-tRNA formyltransferase [Escherichia coli 101-1], g... FMT_ECOLC - Methionyl-tRNA formyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=fmt P... FMT_ECOBW - Methionyl-tRNA formyltransferase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=fmt PE=3 SV=1 gi\|242378814, gi... - gi\|251786541\|ref\|YP_003000845.1\| hypothetical protein B21_03089 [Escherichia coli BL21], gi\|24237881... gi\|253979272, gi... - gi\|254289965\|ref\|YP_003055713.1\| methionyl-tRNA formyltransferase [Escherichia coli BL21(DE3)], gi\|2... gi\|254038448, gi... - gi\|254038448\|ref\|ZP_04872504.1\| methionyl-tRNA formyltransferase [Escherichia sp. 1_1_43], gi\|226838... gi\|253975116, gi... - gi\|254163215\|ref\|YP_003046323.1\| methionyl-tRNA formyltransferase [Escherichia coli B str. REL606], ...	6.0E-80	[30..393]	[5..310]
FMT_ECOLI - (P23882) Methionyl-tRNA formyltransferase (EC 2.1.2.9)	7.0E-80	[30..393]	[4..309]
gi\|254795224, gi... - gi\|254795224\|ref\|YP_003080061.1\| 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferas... FMT_ECO57 - Methionyl-tRNA formyltransferase OS=Escherichia coli O157:H7 GN=fmt PE=3 SV=3 gi\|25320684, gi\|... - pir\|\|E85993 hypothetical protein fmt [imported] - Escherichia coli (strain O157:H7, substrain EDL93... gi\|168758515, gi... - gi\|189354684\|gb\|EDU73103.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC4401],... gi\|15803815, gi\|... - gi\|15803815\|ref\|NP_289849.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 EDL933], gi\|... gi\|217320751, gi... - gi\|217324530\|ref\|ZP_03440614.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. TW14... FMT_ECO5E - Methionyl-tRNA formyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=fmt PE=3 SV=1 gi\|208818701, gi... - gi\|208818701\|ref\|ZP_03259021.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC40... gi\|208733665, gi... - gi\|208812388\|ref\|ZP_03253717.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC40... gi\|188998872, gi... - gi\|188998872\|gb\|EDU67858.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC4076],... gi\|168777855, gi... - gi\|187767010\|gb\|EDU30854.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC4196],... gi\|189361852, gi... - gi\|189361852\|gb\|EDU80271.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC4486],... gi\|189365130, gi... - gi\|189365130\|gb\|EDU83546.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC4501],... gi\|208807557, gi... - gi\|208807557\|ref\|ZP_03249894.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC42... gi\|195939835 - gi\|195939835\|ref\|ZP_03085217.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC40... gi\|15833407, gi\|... - gi\|15833407\|ref\|NP_312180.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. Sakai],... gi\|168802717, gi... - gi\|189375352\|gb\|EDU93768.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC508], ... gi\|189374012, gi... - gi\|189374012\|gb\|EDU92428.1\| methionyl-tRNA formyltransferase [Escherichia coli O157:H7 str. EC869], ...	1.0E-79	[30..393]	[5..310]
gi\|1772500\|emb\|C... - Met-tRNAi formyl transferase [Bacillus subtilis] gi\|1772500 - gi\|1772500\|emb\|CAA71350.1\| Met-tRNAi formyl transferase [Bacillus subtilis]	3.0E-79	[31..387]	[3..302]
FMT_BACSU - Methionyl-tRNA formyltransferase OS=Bacillus subtilis GN=fmt PE=3 SV=2 FMT_BACSU - Methionyl-tRNA formyltransferase OS=Bacillus subtilis (strain 168) GN=fmt PE=3 SV=2 gi\|221318697 - gi\|221318697\|ref\|ZP_03599991.1\| methionyl-tRNA formyltransferase [Bacillus subtilis subsp. subtilis ... gi\|221313773 - gi\|221313773\|ref\|ZP_03595578.1\| methionyl-tRNA formyltransferase [Bacillus subtilis subsp. subtilis ... gi\|221322968 - gi\|221322968\|ref\|ZP_03604262.1\| methionyl-tRNA formyltransferase [Bacillus subtilis subsp. subtilis ...	1.0E-78	[31..387]	[3..302]
FMT_SALTI - Methionyl-tRNA formyltransferase OS=Salmonella typhi GN=fmt PE=3 SV=3 gi\|29140000, gi\|... - gi\|29144362\|ref\|NP_807704.1\| methionyl-tRNA formyltransferase [Salmonella enterica subsp. enterica s... FMT_SALTI - Methionyl-tRNA formyltransferase OS=Salmonella typhi GN=fmt PE=3 SV=3 gi\|213999751 - gi\|213999751\|ref\|ZP_03410486.1\| methionyl-tRNA formyltransferase [Salmonella enterica subsp. enteric... gi\|16762875 - gi\|16762875\|ref\|NP_458492.1\| methionyl-tRNA formyltransferase [Salmonella enterica subsp. enterica s... gi\|213161459 - gi\|213161459\|ref\|ZP_03347169.1\| methionyl-tRNA formyltransferase [Salmonella enterica subsp. enteric... gi\|213418737 - gi\|213418737\|ref\|ZP_03351803.1\| methionyl-tRNA formyltransferase [Salmonella enterica subsp. enteric... gi\|213425784 - gi\|213425784\|ref\|ZP_03358534.1\| methionyl-tRNA formyltransferase [Salmonella enterica subsp. enteric... gi\|213650880 - gi\|213650880\|ref\|ZP_03380933.1\| methionyl-tRNA formyltransferase [Salmonella enterica subsp. enteric...	4.0E-78	[30..393]	[5..310]
FMT_SALPA - Methionyl-tRNA formyltransferase OS=Salmonella paratyphi A GN=fmt PE=3 SV=3 FMT_SALCH - Methionyl-tRNA formyltransferase OS=Salmonella choleraesuis GN=fmt PE=3 SV=3 FMT_SALTY - Methionyl-tRNA formyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=... gi\|167995182, gi... - gi\|205327099\|gb\|EDZ13863.1\| methionyl-tRNA formyltransferase [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=fmt] [protein=methionyl-tRNA formyltransferase] [protein_id=YP_005239597.1] [location=3591319.... FMT_SALTY - Methionyl-tRNA formyltransferase OS=Salmonella typhimurium GN=fmt PE=3 SV=3 FMT_SALTY - Methionyl-tRNA formyltransferase OS=Salmonella typhimurium GN=fmt PE=3 SV=3 FMT_SALCH - Methionyl-tRNA formyltransferase OS=Salmonella choleraesuis GN=fmt PE=3 SV=3 FMT_SALPB - Methionyl-tRNA formyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=fmt PE=3... FMT_SALPC - Methionyl-tRNA formyltransferase OS=Salmonella paratyphi C (strain RKS4594) GN=fmt PE=3 SV=1 gi\|204931414, gi... - gi\|204931414\|ref\|ZP_03222083.1\| methionyl-tRNA formyltransferase [Salmonella enterica subsp. enteric... FMT_SALPK - Methionyl-tRNA formyltransferase OS=Salmonella paratyphi A (strain AKU_12601) GN=fmt PE=3 SV=1 gi\|197241093, gi... - gi\|197262838\|ref\|ZP_03162912.1\| methionyl-tRNA formyltransferase [Salmonella enterica subsp. enteric... FMT_SALPB - Methionyl-tRNA formyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=fmt PE=3... FMT_SALNS - Methionyl-tRNA formyltransferase OS=Salmonella newport (strain SL254) GN=fmt PE=3 SV=1 gi\|205336018, gi... - gi\|205336018\|gb\|EDZ22782.1\| methionyl-tRNA formyltransferase [Salmonella enterica subsp. enterica se... gi\|168239760, gi... - gi\|197287580\|gb\|EDY26972.1\| methionyl-tRNA formyltransferase [Salmonella enterica subsp. enterica se... gi\|168234464, gi... - gi\|205331623\|gb\|EDZ18387.1\| methionyl-tRNA formyltransferase [Salmonella enterica subsp. enterica se... FMT_SALA4 - Methionyl-tRNA formyltransferase OS=Salmonella agona (strain SL483) GN=fmt PE=3 SV=1 FMT_SALSV - Methionyl-tRNA formyltransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=fmt PE=3 SV=1 FMT_SALCH - Methionyl-tRNA formyltransferase OS=Salmonella choleraesuis (strain SC-B67) GN=fmt PE=3 SV=3 gi\|194457822, gi... - gi\|194471458\|ref\|ZP_03077442.1\| methionyl-tRNA formyltransferase [Salmonella enterica subsp. enteric... FMT_SALPA - Methionyl-tRNA formyltransferase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=fmt PE=3 S... FMT_SALHS - Methionyl-tRNA formyltransferase OS=Salmonella heidelberg (strain SL476) GN=fmt PE=3 SV=1	5.0E-78	[30..393]	[5..310]
FMT_BACHD - Methionyl-tRNA formyltransferase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344... FMT_BACHD - Methionyl-tRNA formyltransferase OS=Bacillus halodurans GN=fmt PE=3 SV=1	1.0E-76	[30..392]	[1..306]
FMT_YERPG - Methionyl-tRNA formyltransferase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=fmt PE=3 SV=1 FMT_YERP3 - Methionyl-tRNA formyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=f... gi\|165920155, gi... - gi\|165927879\|ref\|ZP_02223711.1\| methionyl-tRNA formyltransferase [Yersinia pestis biovar Orientalis ... gi\|166205633, gi... - gi\|166213335\|ref\|ZP_02239370.1\| methionyl-tRNA formyltransferase [Yersinia pestis biovar Antiqua str... gi\|165990666, gi... - gi\|166010576\|ref\|ZP_02231474.1\| methionyl-tRNA formyltransferase [Yersinia pestis biovar Antiqua str... FMT_YERPE - Methionyl-tRNA formyltransferase OS=Yersinia pestis GN=fmt PE=1 SV=1 FMT_YERPS - Methionyl-tRNA formyltransferase OS=Yersinia pseudotuberculosis GN=fmt PE=3 SV=1 gi\|166962929, gi... - gi\|167418935\|ref\|ZP_02310688.1\| methionyl-tRNA formyltransferase [Yersinia pestis biovar Orientalis ... gi\|167398510, gi... - gi\|167398510\|ref\|ZP_02304034.1\| methionyl-tRNA formyltransferase [Yersinia pestis biovar Antiqua str... gi\|229836277, gi... - gi\|229836277\|ref\|ZP_04456444.1\| 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase... gi\|167468245 - gi\|167468245\|ref\|ZP_02332949.1\| methionyl-tRNA formyltransferase [Yersinia pestis FV-1] gi\|229696465, gi... - gi\|229840099\|ref\|ZP_04460258.1\| 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase... gi\|167425625, gi... - gi\|167425625\|ref\|ZP_02317378.1\| methionyl-tRNA formyltransferase [Yersinia pestis biovar Mediaevalis... gi\|229690491, gi... - gi\|229842181\|ref\|ZP_04462336.1\| 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase... FMT_YERPB - Methionyl-tRNA formyltransferase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=fmt PE... FMT_YERPY - Methionyl-tRNA formyltransferase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=fmt P... gi\|21961029, gi\|... - gi\|22127892\|ref\|NP_671315.1\| methionyl-tRNA formyltransferase [Yersinia pestis KIM], gi\|21961029\|gb\|... gi\|165915541, gi... - gi\|89104538\|ref\|ZP_01177078.1\| COG0223: Methionyl-tRNA formyltransferase [Yersinia pestis biovar Ori... FMT_YERPS - Methionyl-tRNA formyltransferase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=fmt P... FMT_YERPA - Methionyl-tRNA formyltransferase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fmt PE=3 SV=1 gi\|45440099, gi\|... - gi\|45440099\|ref\|NP_991638.1\| methionyl-tRNA formyltransferase [Yersinia pestis biovar Microtus str. ... FMT_YERPN - Methionyl-tRNA formyltransferase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fmt PE=3 SV=1 gi\|16120579, gi\|... - gi\|218927447\|ref\|YP_002345322.1\| methionyl-tRNA formyltransferase [Yersinia pestis CO92], gi\|1612057... gi\|150260711, gi... - gi\|150260711\|ref\|ZP_01917439.1\| methionyl-tRNA formyltransferase [Yersinia pestis CA88-4125], gi\|149... FMT_YERPP - Methionyl-tRNA formyltransferase OS=Yersinia pestis (strain Pestoides F) GN=fmt PE=3 SV=1	2.0E-75	[30..393]	[5..310]

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Predicted Domain #1

Region A:
Residues: [1-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKMRRITPT RLLFTCRYIS NNASPPVQPL NVLFFGSDTF SNFSLQALNE LRQNNGSCGI  60
   61 VDNIQVVTRS PKWCGRQKSI LKYPPIFDMA EKLQLPRPIT CDTKQEMLAL SKLTPSRQGN 120
  121 PENDGSGAPF NAIIAVSFGK LIPGDLIRAV PLALNVHPSL LPRHKGSAPI QRALLEGDTY 180
  181 TGVTIQTLHP DRFDHGAIVA QTEPLAIATM LSKGRVNDST ADFNSEGLPR RTAILMDQLG 240
  241 ALGAQLLGQT LRERLYLPQN RVQAPTAYKP SYAHRI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	190.69897
Match:	1fmtA_
Description:	Methionyl-tRNAfmet formyltransferase, C-terminal domain; Methionyl-tRNAfmet formyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [277-393]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTEDKRIHWA RDSAAELLNK LETLGPLHAF KEATAARKDA QNSVLKRILF HECKVMRDAR  60
   61 LDNGSKPGMF KYDDIKDCIL VTCRGNLLLC VSRLQFEGFA VERAGQFMAR CGKDAAP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	190.69897
Match:	1fmtA_
Description:	Methionyl-tRNAfmet formyltransferase, C-terminal domain; Methionyl-tRNAfmet formyltransferase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits