YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: HTA2
Organism: Saccharomyces cerevisiae
Length: 132 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HTA2.

Description E-value Query
Range		 Subject
Range
H2A2B_MOUSE - Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab PE=1 SV=3
 1.0E-45 [3..131] [2..130]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 3.0E-45 [3..131] [9..137]
gi|57110421 - gi|57110421|ref|XP_545390.1| PREDICTED: similar to Histone H2A.l (H2A/l) isoform 1 [Canis familiaris...
CCDS4585.1_1 - null
tr|M3WYW4|M3WYW4... - Histone H2A OS=Felis catus GN=LOC101092025 PE=3 SV=1
gi|76651036, gi|... - gi|76651036|ref|XP_874740.1| PREDICTED: similar to Histone H2A.l (H2A/l) isoform 2 [Bos taurus], gi|...
gi|60821950, gi|... - gi|60821988|gb|AAX36593.1| histone 1 H2ac [synthetic construct], gi|60821950|gb|AAX36592.1| histone ...
HIST1H2AC - histone cluster 1, H2ac
gi|109069890 - gi|109069890|ref|XP_001086273.1| PREDICTED: similar to Histone H2A type 1-C [Macaca mulatta]
gi|149731868 - gi|149731868|ref|XP_001497361.1| PREDICTED: similar to Histone H2A type 1-C (H2A/l) [Equus caballus]
ENSOCUP000000075... - pep:novel chromosome:oryCun2:12:10943921:10944313:-1 gene:ENSOCUG00000024878 transcript:ENSOCUT00000...
gi|55625972 - gi|55625972|ref|XP_518286.1| PREDICTED: similar to histone H2A [Pan troglodytes]
gi|194039784, gi... - gi|194039834|ref|XP_001928159.1| PREDICTED: similar to Histone H2A type 1-C (H2A/l) [Sus scrofa], gi...
H2A1C_RAT - Histone H2A type 1-C OS=Rattus norvegicus PE=1 SV=2
 5.0E-45 [3..131] [2..130]
gi|14549635 - gi|14549635|gb|AAK66965.1|AF255739_1 replication-dependent histone H2A [Bufo bufo gagarizans]
 1.0E-44 [3..131] [2..130]
H2A1_RAT - (P02262) Histone H2A type 1
 1.0E-44 [3..131] [1..129]

Back

Predicted Domain #1
Region A:
Residues: [1-59] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGKGGKAG SAAKASQSRS AKAGLTFPVG RVHRLLRRGN YAQRIGSGAP VYLTAVLEY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 568.529817
Match: 1id3C_
Description: Histone H2A
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.581886805340955 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [60-132] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LAAEILELAG NAARDNKKTR IIPRHLQLAI RNDDELNKLL GNVTIAQGGV LPNIHQNLLP  60
   61 KKSAKTAKAS QEL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 568.529817
Match: 1id3C_
Description: Histone H2A
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle