| Protein: | NUP60 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 539 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUP60.
| Description | E-value | Query Range |
Subject Range |
|
|
369.0 | [0..119] | [426..127] |
|
|
166.0 | [0..7] | [539..9] |
|
|
139.0 | [0..2] | [429..4] |
|
|
106.0 | [0..1] | [62..1] |
|
|
94.0 | [0..137] | [420..1] |
|
|
78.0 | [0..119] | [539..124] |
|
|
71.0 | [0..111] | [426..91] |
|
|
71.0 | [0..101] | [428..129] |
|
|
63.0 | [0..151] | [508..1410] |
|
Region A: Residues: [1-69] |
1 11 21 31 41 51
| | | | | |
1 MHRKSLRRAS ATVPSAPYRK QIISNAHNKP SLFSKIKTFF TQKDSARVSP RNNVANKQPR 60
61 NESFNRRIS
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.521 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.416 | N/A | N/A | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.396 | N/A | N/A | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.396 | N/A | N/A | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.383 | N/A | N/A | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.378 | N/A | N/A | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.378 | N/A | N/A | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.363 | N/A | N/A | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.325 | N/A | N/A | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.316 | N/A | N/A | a.118.1 | ARM repeat |
|
Region A: Residues: [70-198] |
1 11 21 31 41 51
| | | | | |
1 SMPGGYFHSE ISPDSTVNRS VVVSAVGEAR NDIENKEEEY DETHETNISN AKLANFFSKK 60
61 GNEPLSEIEI EGVMSLLQKS SKSMITSEGE QKSAEGNNID QSLILKESGS TPISISNAPT 120
121 FNPKYDTSN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.328 | a.79.1 | Antitermination factor NusB |
| View | Download | 0.272 | d.95.2 | Homing endonucleases |
| View | Download | 0.233 | a.36.1 | Signal peptide-binding domain |
| View | Download | 0.232 | d.203.1 | DsrC, the gamma subunit of dissimilatory sulfite reductase |
| View | Download | 0.227 | a.22.1 | Histone-fold |
|
Region A: Residues: [199-539] |
1 11 21 31 41 51
| | | | | |
1 ASMNTTLGSI GSRKYSFNYS SLPSPYKTTV YRYSAAKKIP DTYTANTSAQ SIASAKSVRS 60
61 GVSKSAPSKK ISNTAAALVS LLDENDSKKN NAASELANPY SSYVSQIRKH KRVSPNAAPR 120
121 QEISEEETTV KPLFQNVPEQ GEEPMKQLNA TKISPSAPSK DSFTKYKPAR SSSLRSNVVV 180
181 AETSPEKKDG GDKPPSSAFN FSFNTSRNVE PTENAYKSEN APSASSKEFN FTNLQAKPLV 240
241 GKPKTELTKG DSTPVQPDLS VTPQKSSSKG FVFNSVQKKS RSNLSQENDN EGKHISASID 300
301 NDFSEEKAEE FDFNVPVVSK QLGNGLVDEN KVEAFKSLYT F
|
| Detection Method: | |
| Confidence: | 11.0 |
| Match: | |
| Description: | No description for 1m2vB was found. |
