YRC Public Data Repository - Protein Structure Prediction

Protein:	AIM1
Organism:	Saccharomyces cerevisiae
Length:	118 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AIM1.

Description	E-value	Query Range	Subject Range
gi\|151941344 - gi\|151941344\|gb\|EDN59715.1\| conserved protein [Saccharomyces cerevisiae YJM789] gi\|190406696 - gi\|190406696\|gb\|EDV09963.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] AIM1 - Protein involved in mitochondrial function or organization; null mutant displays elevated frequency ... AIM1_YEAST - Altered inheritance of mitochondria protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288...	7.0E-40	[1..118]	[1..118]
YJ2B_SCHPO - Uncharacterized bolA-like protein C4B3.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN... SPCC4B3.11c - conserved eukaryotic protein	3.0E-26	[7..107]	[8..101]
BOLA1 - bolA homolog 1 (E. coli)	3.0E-22	[32..114]	[26..114]
SUFE1_ARATH - SufE-like protein 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SUFE1 PE=1 SV=2	1.0E-21	[30..113]	[273..370]
BOLA1_MOUSE - BolA-like protein 1 OS=Mus musculus GN=Bola1 PE=1 SV=1	2.0E-20	[32..114]	[26..114]
gi\|209743876, gi... - pir\|\|BVECBA bolA protein - Escherichia coli (strain K-12), gi\|41070\|emb\|CAA35633.1\| unnamed protein... gi\|81244334, gi\|... - gi\|82542923\|ref\|YP_406870.1\| possible regulator of murein genes [Shigella boydii Sb227], gi\|81244334... gi\|24050609, gi\|... - gi\|24111818\|ref\|NP_706328.1\| possible regulator of murein genes [Shigella flexneri 2a str. 301], gi\|... gi\|26246443, gi\|... - gi\|26246443\|ref\|NP_752482.1\| BolA protein [Escherichia coli CFT073], gi\|26106841\|gb\|AAN79026.1\|AE016... gi\|73854487, gi\|... - gi\|74311010\|ref\|YP_309429.1\| possible regulator of murein genes [Shigella sonnei Ss046], gi\|73854487... gi\|30061937, gi\|... - gi\|30061937\|ref\|NP_836108.1\| possible regulator of murein genes [Shigella flexneri 2a str. 2457T], g... gi\|82775659, gi\|... - gi\|82775659\|ref\|YP_402006.1\| possible regulator of murein genes [Shigella dysenteriae Sd197], gi\|812... gi\|49176023, gi\|... - gi\|49176023\|ref\|NP_414969.3\| possible regulator of murein genes [Escherichia coli K12], gb\|AAC73538.... gi\|15800165, gi\|... - gi\|15800165\|ref\|NP_286177.1\| possible regulator of murein genes [Escherichia coli O157:H7 EDL933], g... gi\|226898781, gi... - gi\|237707571\|ref\|ZP_04538052.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|13359946 - gi\|13359946\|dbj\|BAB33912.1\| putative regulator of murein genes [Escherichia coli O157:H7 str. Sakai] gi\|91071080, gi\|... - gi\|91209506\|ref\|YP_539492.1\| BolA transcriptional regulator [Escherichia coli UTI89], gi\|91071080\|gb... gi\|115511819, gi... - gi\|117622695\|ref\|YP_851608.1\| regulator of penicillin binding proteins and beta lactamase transcript... gi\|13359946 - gi\|13359946\|dbj\|BAB33912.1\| putative regulator of murein genes [Escherichia coli O157:H7]	5.0E-20	[38..114]	[14..96]
gi\|21957771, gi\|... - gi\|22124932\|ref\|NP_668355.1\| transcriptional regulator BolA [Yersinia pestis KIM], gi\|21957771\|gb\|AA... gi\|117674582, gi... - gi\|77631925\|ref\|ZP_00794511.1\| COG0271: Stress-induced morphogen (activity unknown) [Yersinia pseudo... gi\|167051405, gi... - gi\|167398901\|ref\|ZP_02304425.1\| bolA protein [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|167... gi\|25300377 - pir\|\|AH0383 BolA protein [imported] - Yersinia pestis (strain CO92) gi\|166205853, gi... - gi\|166213066\|ref\|ZP_02239101.1\| bolA protein [Yersinia pestis biovar Antiqua str. B42003004], gi\|166... gi\|51595306, gi\|... - gi\|51595306\|ref\|YP_069497.1\| transcriptional regulator BolA [Yersinia pseudotuberculosis IP 32953], ... gi\|167057391, gi... - gi\|167423221\|ref\|ZP_02314974.1\| bolA protein [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|... gi\|45440620, gi\|... - gi\|45440620\|ref\|NP_992159.1\| transcriptional regulator BolA [Yersinia pestis biovar Microtus str. 91... gi\|167421461, gi... - gi\|167421461\|ref\|ZP_02313214.1\| bolA protein [Yersinia pestis biovar Orientalis str. MG05-1020], gi\|... Q66DT7\|Q66DT7_YERPS - Activator of morphogenic pathway (BolA family), important in general stress response - Yersinia pseu... gi\|186894323, gi... - gi\|186894323\|ref\|YP_001871435.1\| transcriptional regulator BolA [Yersinia pseudotuberculosis PB1/+],... gi\|218930190, gi... - gi\|218930190\|ref\|YP_002348065.1\| transcriptional regulator BolA [Yersinia pestis CO92], gi\|16123322\|... gi\|170025454, gi... - gi\|170025454\|ref\|YP_001721959.1\| transcriptional regulator BolA [Yersinia pseudotuberculosis YPIII],... gi\|149291407, gi... - gi\|149364994\|ref\|ZP_01887029.1\| possible regulator of murein genes [Yersinia pestis CA88-4125], gi\|1... gi\|229838764, gi... - gi\|229838764\|ref\|ZP_04458923.1\| regulator of penicillin binding proteins and beta lactamase transcri... gi\|229896082, gi... - gi\|229896082\|ref\|ZP_04511252.1\| regulator of penicillin binding proteins and beta lactamase transcri... gi\|229899332, gi... - gi\|229899332\|ref\|ZP_04514475.1\| regulator of penicillin binding proteins and beta lactamase transcri... gi\|165990129, gi... - gi\|166011129\|ref\|ZP_02232027.1\| bolA protein [Yersinia pestis biovar Antiqua str. E1979001], gi\|1659... gi\|162353346, gi... - gi\|77635223\|ref\|ZP_00797310.1\| COG0271: Stress-induced morphogen (activity unknown) [Yersinia pestis... gi\|165921538, gi... - gi\|165926610\|ref\|ZP_02222442.1\| bolA protein [Yersinia pestis biovar Orientalis str. F1991016], gi\|1... gi\|108774744, gi... - gi\|229901324\|ref\|ZP_04516446.1\| regulator of penicillin binding proteins and beta lactamase transcri... gi\|165916080, gi... - gi\|89103167\|ref\|ZP_01175757.1\| COG0271: Stress-induced morphogen (activity unknown) [Yersinia pestis... gi\|108808645, gi... - gi\|108808645\|ref\|YP_652561.1\| transcriptional regulator BolA [Yersinia pestis Antiqua], gi\|108780558... gi\|145600054, gi... - gi\|145600054\|ref\|YP_001164130.1\| transcriptional regulator BolA [Yersinia pestis Pestoides F], gi\|14...	1.0E-19	[35..115]	[1..87]
gi\|17429977 - gi\|17429977\|emb\|CAD16661.1\| probable transcription regulator protein [Ralstonia solanacearum GMI1000... gi\|17547673 - gi\|17547673\|ref\|NP_521075.1\| hypothetical protein RSc2954 [Ralstonia solanacearum GMI1000]	2.0E-19	[35..114]	[1..76]
gi\|254849424, gi... - gi\|75830031\|ref\|ZP_00759317.1\| COG0271: Stress-induced morphogen (activity unknown) [Vibrio cholerae... BOLA_VIBCH - DNA-binding transcriptional regulator BolA OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El To... gi\|146316430, gi... - gi\|75827583\|ref\|ZP_00757018.1\| COG0271: Stress-induced morphogen (activity unknown) [Vibrio cholerae... gi\|121726775, gi... - gi\|75815769\|ref\|ZP_00746262.1\| COG0271: Stress-induced morphogen (activity unknown) [Vibrio cholerae... gi\|227010308, gi... - gi\|227082420\|ref\|YP_002810971.1\| bolA protein [Vibrio cholerae M66-2], gi\|227010308\|gb\|ACP06520.1\| b... gi\|121549568, gi... - gi\|121586156\|ref\|ZP_01675947.1\| bolA protein [Vibrio cholerae 2740-80], gi\|121549568\|gb\|EAX59592.1\| ... gi\|124119746, gi... - gi\|153221399\|ref\|ZP_01952377.1\| bolA protein [Vibrio cholerae MAK 757], gi\|124119746\|gb\|EAY38489.1\| ... BOLA_VIBCH - Protein BolA OS=Vibrio cholerae GN=bolA PE=3 SV=1 gi\|153817860, gi... - gi\|153817860\|ref\|ZP_01970527.1\| bolA protein [Vibrio cholerae NCTC 8457], gi\|126511568\|gb\|EAZ74162.1... gi\|126520974, gi... - gi\|153821481\|ref\|ZP_01974148.1\| bolA protein [Vibrio cholerae B33], gi\|126520974\|gb\|EAZ78197.1\| bolA...	3.0E-19	[38..114]	[2..84]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLPQTMLRS ISVKHVRWPR ILTGSKLWYS TQMAMTPEEK MITDKLQQEL EPEVCKVQDV  60
   61 SGGCGSMFAI NITSKKFNGL SLIKQHQLVN RILRDDISRW HGLQLTTKKS TGKGPASS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	33.091515
Match:	PF01722
Description:	BolA-like protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits