YRC Public Data Repository - Protein Structure Prediction

Protein:	YAL044W-A
Organism:	Saccharomyces cerevisiae
Length:	110 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAL044W-A.

Description	E-value	Query Range	Subject Range
YAL044W-A - Putative protein of unknown function; similar to S. pombe uvi31 which is a putative DNA repair prote... YA044_YEAST - Uncharacterized bolA-like protein YAL044W-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)...	1.0E-30	[1..110]	[1..110]
gi\|209743876, gi... - pir\|\|BVECBA bolA protein - Escherichia coli (strain K-12), gi\|41070\|emb\|CAA35633.1\| unnamed protein... gi\|81244334, gi\|... - gi\|82542923\|ref\|YP_406870.1\| possible regulator of murein genes [Shigella boydii Sb227], gi\|81244334... gi\|24050609, gi\|... - gi\|24111818\|ref\|NP_706328.1\| possible regulator of murein genes [Shigella flexneri 2a str. 301], gi\|... gi\|26246443, gi\|... - gi\|26246443\|ref\|NP_752482.1\| BolA protein [Escherichia coli CFT073], gi\|26106841\|gb\|AAN79026.1\|AE016... gi\|73854487, gi\|... - gi\|74311010\|ref\|YP_309429.1\| possible regulator of murein genes [Shigella sonnei Ss046], gi\|73854487... gi\|30061937, gi\|... - gi\|30061937\|ref\|NP_836108.1\| possible regulator of murein genes [Shigella flexneri 2a str. 2457T], g... gi\|82775659, gi\|... - gi\|82775659\|ref\|YP_402006.1\| possible regulator of murein genes [Shigella dysenteriae Sd197], gi\|812... gi\|49176023, gi\|... - gi\|49176023\|ref\|NP_414969.3\| possible regulator of murein genes [Escherichia coli K12], gb\|AAC73538.... gi\|15800165, gi\|... - gi\|15800165\|ref\|NP_286177.1\| possible regulator of murein genes [Escherichia coli O157:H7 EDL933], g... gi\|226898781, gi... - gi\|237707571\|ref\|ZP_04538052.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|13359946 - gi\|13359946\|dbj\|BAB33912.1\| putative regulator of murein genes [Escherichia coli O157:H7 str. Sakai] gi\|91071080, gi\|... - gi\|91209506\|ref\|YP_539492.1\| BolA transcriptional regulator [Escherichia coli UTI89], gi\|91071080\|gb... gi\|115511819, gi... - gi\|117622695\|ref\|YP_851608.1\| regulator of penicillin binding proteins and beta lactamase transcript... gi\|13359946 - gi\|13359946\|dbj\|BAB33912.1\| putative regulator of murein genes [Escherichia coli O157:H7]	1.0E-24	[6..106]	[8..97]
BOLA1 - bolA homolog 1 (E. coli)	3.0E-24	[10..110]	[30..119]
SUFE1_ARATH - SufE-like protein 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SUFE1 PE=1 SV=2	4.0E-23	[15..104]	[284..370]
gi\|56414398, gi\|... - gi\|56414398\|ref\|YP_151473.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ser... gi\|161504377, gi... - gi\|161504377\|ref\|YP_001571489.1\| transcriptional regulator BolA [Salmonella enterica subsp. arizonae... gi\|238911422 - gi\|238911422\|ref\|ZP_04655259.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|16501717, gi\|... - gi\|25300378\|pir\|\|AI0557 BolA protein [imported] - Salmonella enterica subsp. enterica serovar Typhi ... gi\|16418953, gi\|... - gi\|16763827\|ref\|NP_459442.1\| transcriptional regulator BolA [Salmonella typhimurium LT2], gi\|1641895... gi\|197212471, gi... - gi\|197248768\|ref\|YP_002145427.1\| protein BolA [Salmonella enterica subsp. enterica serovar Agona str... gi\|197244177, gi... - gi\|197265922\|ref\|ZP_03165996.1\| protein BolA [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|197363318, gi... - gi\|197363318\|ref\|YP_002142955.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica... gi\|197937434, gi... - gi\|198242918\|ref\|YP_002214400.1\| protein BolA [Salmonella enterica subsp. enterica serovar Dublin st... gi\|194401515, gi... - gi\|194442852\|ref\|YP_002039689.1\| protein BolA [Salmonella enterica subsp. enterica serovar Newport s... gi\|194447317, gi... - gi\|194447317\|ref\|YP_002044481.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica... gi\|194457196, gi... - gi\|194470832\|ref\|ZP_03076816.1\| protein BolA [Salmonella enterica subsp. enterica serovar Kentucky s... gi\|194734965, gi... - gi\|194734965\|ref\|YP_002113477.1\| protein BolA [Salmonella enterica subsp. enterica serovar Schwarzen... gi\|168240271, gi... - gi\|205340222\|gb\|EDZ26986.1\| protein BolA [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|205349843, gi... - gi\|205349843\|gb\|EDZ36474.1\| protein BolA [Salmonella enterica subsp. enterica serovar Hadar str. RI_... lcl\|NC_016856.1_... - [gene=bolA] [protein=transcriptional regulator BolA] [protein_id=YP_005236141.1] [location=501694..5... gi\|195631964, gi... - gi\|195631964\|gb\|EDX50484.1\| protein BolA [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|205343965, gi... - gi\|205343965\|gb\|EDZ30729.1\| protein BolA [Salmonella enterica subsp. enterica serovar Weltevreden st... gi\|161364726, gi... - gi\|161615362\|ref\|YP_001589327.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica... gi\|167551740, gi... - gi\|205323408\|gb\|EDZ11247.1\| protein BolA [Salmonella enterica subsp. enterica serovar Saintpaul str.... gi\|205334069, gi... - gi\|205334069\|gb\|EDZ20833.1\| protein BolA [Salmonella enterica subsp. enterica serovar Kentucky str. ... gi\|168237559, gi... - gi\|197289573\|gb\|EDY28936.1\| protein BolA [Salmonella enterica subsp. enterica serovar Schwarzengrund... gi\|214001926 - gi\|214001926\|ref\|ZP_03412661.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213616066 - gi\|213616066\|ref\|ZP_03371892.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213646007 - gi\|213646007\|ref\|ZP_03376060.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213853066 - gi\|213853066\|ref\|ZP_03382598.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213974200 - gi\|213974200\|ref\|ZP_03401459.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213161816 - gi\|213161816\|ref\|ZP_03347526.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213419492 - gi\|213419492\|ref\|ZP_03352558.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213425860 - gi\|213425860\|ref\|ZP_03358610.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|213580886 - gi\|213580886\|ref\|ZP_03362712.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|200390073, gi... - gi\|200390073\|ref\|ZP_03216684.1\| protein BolA [Salmonella enterica subsp. enterica serovar Virchow st... gi\|205271538, gi... - gi\|205351757\|ref\|YP_002225558.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica... gi\|206707729, gi... - gi\|207855926\|ref\|YP_002242577.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica... gi\|213023413 - gi\|213023413\|ref\|ZP_03337860.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ... gi\|29142802, gi\|... - gi\|29142802\|ref\|NP_806144.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ser... gi\|16759426 - gi\|16759426\|ref\|NP_455043.1\| transcriptional regulator BolA [Salmonella enterica subsp. enterica ser...	8.0E-23	[10..106]	[1..86]
gi\|254849424, gi... - gi\|75830031\|ref\|ZP_00759317.1\| COG0271: Stress-induced morphogen (activity unknown) [Vibrio cholerae... BOLA_VIBCH - DNA-binding transcriptional regulator BolA OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El To... gi\|146316430, gi... - gi\|75827583\|ref\|ZP_00757018.1\| COG0271: Stress-induced morphogen (activity unknown) [Vibrio cholerae... gi\|121726775, gi... - gi\|75815769\|ref\|ZP_00746262.1\| COG0271: Stress-induced morphogen (activity unknown) [Vibrio cholerae... gi\|227010308, gi... - gi\|227082420\|ref\|YP_002810971.1\| bolA protein [Vibrio cholerae M66-2], gi\|227010308\|gb\|ACP06520.1\| b... gi\|121549568, gi... - gi\|121586156\|ref\|ZP_01675947.1\| bolA protein [Vibrio cholerae 2740-80], gi\|121549568\|gb\|EAX59592.1\| ... gi\|124119746, gi... - gi\|153221399\|ref\|ZP_01952377.1\| bolA protein [Vibrio cholerae MAK 757], gi\|124119746\|gb\|EAY38489.1\| ... BOLA_VIBCH - Protein BolA OS=Vibrio cholerae GN=bolA PE=3 SV=1 gi\|153817860, gi... - gi\|153817860\|ref\|ZP_01970527.1\| bolA protein [Vibrio cholerae NCTC 8457], gi\|126511568\|gb\|EAZ74162.1... gi\|126520974, gi... - gi\|153821481\|ref\|ZP_01974148.1\| bolA protein [Vibrio cholerae B33], gi\|126520974\|gb\|EAZ78197.1\| bolA...	3.0E-22	[12..110]	[2..89]
BOLA1_MOUSE - BolA-like protein 1 OS=Mus musculus GN=Bola1 PE=1 SV=1	3.0E-22	[10..110]	[30..119]
gi\|21957771, gi\|... - gi\|22124932\|ref\|NP_668355.1\| transcriptional regulator BolA [Yersinia pestis KIM], gi\|21957771\|gb\|AA... gi\|117674582, gi... - gi\|77631925\|ref\|ZP_00794511.1\| COG0271: Stress-induced morphogen (activity unknown) [Yersinia pseudo... gi\|167051405, gi... - gi\|167398901\|ref\|ZP_02304425.1\| bolA protein [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|167... gi\|25300377 - pir\|\|AH0383 BolA protein [imported] - Yersinia pestis (strain CO92) gi\|166205853, gi... - gi\|166213066\|ref\|ZP_02239101.1\| bolA protein [Yersinia pestis biovar Antiqua str. B42003004], gi\|166... gi\|51595306, gi\|... - gi\|51595306\|ref\|YP_069497.1\| transcriptional regulator BolA [Yersinia pseudotuberculosis IP 32953], ... gi\|167057391, gi... - gi\|167423221\|ref\|ZP_02314974.1\| bolA protein [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|... gi\|45440620, gi\|... - gi\|45440620\|ref\|NP_992159.1\| transcriptional regulator BolA [Yersinia pestis biovar Microtus str. 91... gi\|167421461, gi... - gi\|167421461\|ref\|ZP_02313214.1\| bolA protein [Yersinia pestis biovar Orientalis str. MG05-1020], gi\|... Q66DT7\|Q66DT7_YERPS - Activator of morphogenic pathway (BolA family), important in general stress response - Yersinia pseu... gi\|186894323, gi... - gi\|186894323\|ref\|YP_001871435.1\| transcriptional regulator BolA [Yersinia pseudotuberculosis PB1/+],... gi\|218930190, gi... - gi\|218930190\|ref\|YP_002348065.1\| transcriptional regulator BolA [Yersinia pestis CO92], gi\|16123322\|... gi\|170025454, gi... - gi\|170025454\|ref\|YP_001721959.1\| transcriptional regulator BolA [Yersinia pseudotuberculosis YPIII],... gi\|149291407, gi... - gi\|149364994\|ref\|ZP_01887029.1\| possible regulator of murein genes [Yersinia pestis CA88-4125], gi\|1... gi\|229838764, gi... - gi\|229838764\|ref\|ZP_04458923.1\| regulator of penicillin binding proteins and beta lactamase transcri... gi\|229896082, gi... - gi\|229896082\|ref\|ZP_04511252.1\| regulator of penicillin binding proteins and beta lactamase transcri... gi\|229899332, gi... - gi\|229899332\|ref\|ZP_04514475.1\| regulator of penicillin binding proteins and beta lactamase transcri... gi\|165990129, gi... - gi\|166011129\|ref\|ZP_02232027.1\| bolA protein [Yersinia pestis biovar Antiqua str. E1979001], gi\|1659... gi\|162353346, gi... - gi\|77635223\|ref\|ZP_00797310.1\| COG0271: Stress-induced morphogen (activity unknown) [Yersinia pestis... gi\|165921538, gi... - gi\|165926610\|ref\|ZP_02222442.1\| bolA protein [Yersinia pestis biovar Orientalis str. F1991016], gi\|1... gi\|108774744, gi... - gi\|229901324\|ref\|ZP_04516446.1\| regulator of penicillin binding proteins and beta lactamase transcri... gi\|165916080, gi... - gi\|89103167\|ref\|ZP_01175757.1\| COG0271: Stress-induced morphogen (activity unknown) [Yersinia pestis... gi\|108808645, gi... - gi\|108808645\|ref\|YP_652561.1\| transcriptional regulator BolA [Yersinia pestis Antiqua], gi\|108780558... gi\|145600054, gi... - gi\|145600054\|ref\|YP_001164130.1\| transcriptional regulator BolA [Yersinia pestis Pestoides F], gi\|14...	1.0E-21	[9..106]	[1..87]
gi\|107100314 - gi\|107100314\|ref\|ZP_01364232.1\| hypothetical protein PaerPA_01001339 [Pseudomonas aeruginosa PACS2] gi\|218773404, gi... - gi\|218893176\|ref\|YP_002442045.1\| morphogene protein BolA [Pseudomonas aeruginosa LESB58], gi\|2187734... gi\|194550194, gi... - gi\|84316626\|ref\|ZP_00965098.1\| COG0271: Stress-induced morphogen (activity unknown) [Pseudomonas aer... gi\|15596054, gi\|... - gi\|9946754\|gb\|AAG04246.1\|AE004520_9 morphogene protein BolA [Pseudomonas aeruginosa PAO1], gi\|155960... gi\|254245143, gi... - gi\|84322665\|ref\|ZP_00970749.1\| COG0271: Stress-induced morphogen (activity unknown) [Pseudomonas aer... gi\|11350617 - pir\|\|C83539 morphogene protein BolA PA0857 [imported] - Pseudomonas aeruginosa (strain PAO1)	5.0E-21	[16..109]	[3..85]
gi\|91191516, gi\|... - gi\|91223430\|ref\|ZP_01258695.1\| cell division protein BolA [Vibrio alginolyticus 12G01], gi\|91191516\|... gi\|75856125, gi\|... - gi\|75856125\|ref\|ZP_00763759.1\| COG0271: Stress-induced morphogen (activity unknown) [Vibrio sp. Ex25... BOLA_VIBAL - DNA-binding transcriptional regulator BolA OS=Vibrio alginolyticus GN=bolA PE=3 SV=1	6.0E-21	[12..107]	[2..86]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKRAMSTDG PVARTILKRL ECGFPDYKNF AFGLYNDSHK HKGHAGVQGN VSAETHFRIE  60
   61 MVSKKFEGLK LPQRHRMVYS LLQDEMAQAN GIHALQLSLK TPQEYESKAK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	15.187087
Match:	PF01722
Description:	BolA-like protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits