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View Structure Prediction Details

Protein: GCV3
Organism: Saccharomyces cerevisiae
Length: 177 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GCV3.

Description E-value Query
Range		 Subject
Range
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
 3.0E-38 [11..177] [2..159]
GCSH_FLAAN - Glycine cleavage system H protein, mitochondrial OS=Flaveria anomala GN=GDCSH PE=2 SV=1
 6.0E-38 [11..177] [2..159]
gi|3688309 - gi|3688309|emb|CAB16914.1| H-Protein precursor [Flaveria pringlei]
 7.0E-38 [11..177] [2..159]
GCSH_ORYSI - Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. indica GN=GDCSH PE=2 SV=1
GCSH_ORYSA - Glycine cleavage system H protein, mitochondrial precursor - Oryza sativa (Rice)
GCSH_ORYSJ - Glycine cleavage system H protein, mitochondrial OS=Oryza sativa subsp. japonica GN=GDCSH PE=1 SV=1
 2.0E-36 [11..177] [2..162]
GCSH_FLATR - Glycine cleavage system H protein, mitochondrial OS=Flaveria trinervia GN=GDCSH PE=2 SV=1
 5.0E-36 [11..176] [2..160]
GCSH2_ARATH - Glycine cleavage system H protein 2, mitochondrial OS=Arabidopsis thaliana GN=GDH2 PE=2 SV=1
 5.0E-36 [22..177] [2..153]

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Predicted Domain #1
Region A:
Residues: [1-177] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHTTSTMLR TTRLWTTRMP AVSKLFLRNS SGNALNKNKL PFLYSSQGPQ AVRYTSQHEW  60
   61 IAVHQDKTAF VGITKYATDS LGDATYVELP EVGTEISQGE SLGSIESVKS ASEIYQPADG 120
  121 TVEEINTNLE ENPGVVNEDP MGDGWLVKMK LGEGVNVEQV EGLMSLEQYE KTLVHDD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 246.751666
Match: 1dxmA_
Description: Protein H of glycine cleavage system
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle