YRC Public Data Repository - Protein Structure Prediction

Protein:	POP5
Organism:	Saccharomyces cerevisiae
Length:	173 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POP5.

Description	E-value	Query Range	Subject Range
POP5_YEAST - Ribonuclease P/MRP protein subunit POP5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=... POP5 - Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursor... gi\|190406681 - gi\|190406681\|gb\|EDV09948.1\| ribonucleases P/MRP protein subunit POP5 [Saccharomyces cerevisiae RM11-... gi\|151941359 - gi\|151941359\|gb\|EDN59730.1\| RNase MRP subunit [Saccharomyces cerevisiae YJM789]	1.0E-57	[1..173]	[1..173]
POP5_MOUSE - Ribonuclease P/MRP protein subunit POP5 OS=Mus musculus GN=Pop5 PE=1 SV=1	2.0E-35	[1..144]	[1..130]
POP5 - processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae) gi\|109098960 - gi\|109098960\|ref\|XP_001089950.1\| PREDICTED: similar to processing of precursor 5, ribonuclease P/MRP... gi\|114647330 - gi\|114647330\|ref\|XP_509430.2\| PREDICTED: processing of precursor 5, ribonuclease P/MRP subunit isofo...	9.0E-35	[1..144]	[1..130]
SPCC830.09c - RNase P and RNase MRP subunit POP5_SCHPO - Ribonuclease P/MRP protein subunit POP5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SP...	1.0E-32	[1..140]	[1..130]
RNP2_PYRAB - Ribonuclease P protein component 2 OS=Pyrococcus abyssi GN=rnp2 PE=3 SV=1 RNP2_PYRAB - Ribonuclease P protein component 2 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rnp2 PE=3 SV=1	2.0E-26	[2..131]	[11..113]
CG14057-PA - This gene is referred to in FlyBase by the symbol Dmel\CG14057 (CG14057, FBgn0036696). It is a prote...	5.0E-26	[1..139]	[1..119]
RNP2_PYRHO - Ribonuclease P protein component 2 OS=Pyrococcus horikoshii GN=rnp2 PE=1 SV=1 RNP2_PYRHO - Ribonuclease P protein component 2 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 99...	8.0E-26	[2..131]	[12..114]
CE22751 - status:Partially_confirmed UniProt:Q9XWY3 protein_id:CAC35866.1	2.0E-24	[1..146]	[1..125]
RNP2_METTH - Ribonuclease P protein component 2 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DS... gi\|7429933 - pir\|\|E69191 conserved hypothetical protein MTH687 - Methanobacterium thermoautotrophicum (strain Del...	3.0E-24	[2..136]	[8..121]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRLKSRYIL FEIIFPPTDT NVEESVSKAD ILLSHHRASP ADVSIKSILQ EIRRSLSLNL  60
   61 GDYGSAKCNS LLQLKYFSNK TSTGIIRCHR EDCDLVIMAL MLMSKIGDVD GLIVNPVKVS 120
  121 GTIKKIEQFA MRRNSKILNI IKCSQSSHLS DNDFIINDFK KIGRENENEN EDD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	54.091515
Match:	PF01900
Description:	Rpp14 family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits