YRC Public Data Repository - Protein Structure Prediction

Protein:	SNC1
Organism:	Saccharomyces cerevisiae
Length:	117 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNC1.

Description	E-value	Query Range	Subject Range
VA727_ARATH - Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1	1.0E-29	[11..109]	[132..230]
gi\|12851438 - gi\|12851438\|dbj\|BAB29042.1\| unnamed protein product [Mus musculus]	2.0E-28	[19..97]	[24..102]
SYB_TETCF - Synaptobrevin OS=Tetronarce californica PE=2 SV=1	3.0E-28	[6..96]	[17..103]
gi\|2660907, gi\|1... - gi\|2660907\|gb\|AAB88137.1\| synaptobrevin [Xenopus laevis], gi\|148235941\|ref\|NP_001080943.1\| vesicle-a...	8.0E-28	[20..109]	[21..110]
SNC1_YEAST - Synaptobrevin homolog 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNC1 PE=1 SV=1 SNC1 - Vesicle membrane receptor protein (v-SNARE) involved in the fusion between Golgi-derived secretory v... gi\|190406678 - gi\|190406678\|gb\|EDV09945.1\| hypothetical protein SCRG_05664 [Saccharomyces cerevisiae RM11-1a] gi\|151941362 - gi\|151941362\|gb\|EDN59733.1\| suppressor of the null allele of cap [Saccharomyces cerevisiae YJM789]	2.0E-27	[1..117]	[1..117]
gi\|436307 - gi\|436307\|gb\|AAB28707.1\| synaptic vesicle protein [Drosophila sp.] gi\|738733 - gi\|738733\|prf\|\|2001392A synaptic vesicle protein	4.0E-27	[20..107]	[33..120]
n-syb-PF, n-syb-PA - The gene n-synaptobrevin is referred to in FlyBase by the symbol Dmel\n-syb (CG17248, FBgn0013342). ... gi\|220953852, gi... - gi\|220953852\|gb\|ACL89469.1\| n-syb-PA [synthetic construct], gi\|220943974\|gb\|ACL84530.1\| n-syb-PA [sy...	5.0E-27	[20..107]	[33..120]

Back

Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSTPFDPY ALSEHDEERP QNVQSKSRTA ELQAEIDDTV GIMRDNINKV AERGERLTSI  60
   61 EDKADNLAVS AQGFKRGANR VRKAMWYKDL KMKMCLALVI IILLVVIIVP IAVHFSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	127.927757
Match:	1sfcA_
Description:	Synaptobrevin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits