YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: MAK16
Organism: Saccharomyces cerevisiae
Length: 306 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MAK16.

Description E-value Query
Range
Subject
Range
MAK16 - Essential nuclear protein, constituent of 66S pre-ribosomal particles; required for maturation of 25...
5.0E-99 [1..306] [1..306]
gi|14042167 - gi|14042167|dbj|BAB55134.1| unnamed protein product [Homo sapiens]
2.0E-92 [2..296] [3..292]
gi|15341814 - gi|15341814|gb|AAH13079.1| Mak16 protein [Mus musculus]
2.0E-86 [2..296] [3..282]
gi|12718211 - gi|12718211|emb|CAC28755.1| probable MAK16 protein [Neurospora crassa]
9.0E-83 [1..296] [1..298]
CE04006 - status:Confirmed UniProt:Q18035 protein_id:AAB47596.1
2.0E-82 [3..257] [4..248]
MAK16_SCHPO - Protein mak16 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mak16 PE=3 SV=1
mak16 - nuclear HMG-like acidic protein Mak16
3.0E-79 [3..296] [4..291]
gi|25301668, gi|... - gi|9295711|gb|AAF87017.1|AC005292_26 F26F24.12 [Arabidopsis thaliana], pir||H86366 protein F26F24.12...
3.0E-75 [3..199] [4..198]
MAK16_SCHMA - Protein MAK16 homolog OS=Schistosoma mansoni GN=MAK16 PE=1 SV=2
7.0E-73 [2..193] [3..192]

Back

Predicted Domain #1
Region A:
Residues: [1-247]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDEIVWQVI NQSFCSHRIK APNGQNFCRN EYNVTGLCTR QSCPLANSKY ATVKCDNGKL  60
   61 YLYMKTPERA HTPAKLWERI KLSKNYTKAL QQIDEHLLHW SKFFRHKCKQ RFTKLTQVMI 120
  121 TERRLALREE ERHYVGVAPK VKRREQNRER KALVAAKIEK AIEKELMDRL KSGAYGDKPL 180
  181 NVDEKVWKKI MGQMEEENSQ DEEEDWDEEE ESDDGEVEYV ADDGEGEYVD VDDLEKWLAD 240
  241 SDREASS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [248-306]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASQSESDSES ESDSDSDEEN KNSAKRRKKG TSAKTKRPKV EIEYEEEHEV QNAEQEVAQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle