YRC Public Data Repository - Protein Structure Prediction

Protein:	YAL004W
Organism:	Saccharomyces cerevisiae
Length:	215 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAL004W.

Description	E-value	Query Range	Subject Range
DHE2_ACHKL - NAD-specific glutamate dehydrogenase OS=Achlya klebsiana PE=3 SV=1	2.0E-87	[1..215]	[815..1030]
gi\|1165014 - gi\|1165014\|emb\|CAA55170.1\| LAC ORF [Drosophila auraria]	4.0E-70	[1..212]	[384..597]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-55	[1..176]	[284..460]
gi\|10798847 - gi\|10798847\|gb\|AAG23119.1\| putative glutamate dehydrogenase [Haloferax mediterranei] gi\|10798847\|gb\|A... - putative glutamate dehydrogenase [Haloferax mediterranei]	3.0E-44	[9..200]	[755..920]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVTSGGLNF KDTVFNEQQR DIESTTTQVE NQDVFFLTLL VQTVSNGSGG RFVNNTQDIQ  60
   61 TSNGTSILGS LSLRIVEVSW DSDDSVIDLG SQVRFGSFLH LTQDHGGDLF WGKVLGFTLK 120
  121 FNLNLRLTVN IDQLEWEVLH VSLHFWVVEV STDQTLSVEN GIRRIHSSLI LSSITNQSFS 180
  181 VSESDKRWSG SVTLIVGNNV HTIISKVSNT RVCCT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits