| Protein: | VAR1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 398 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VAR1.
| Description | E-value | Query Range |
Subject Range |
|
|
256.0 | [0..1] | [398..1] |
|
Region A: Residues: [1-289] |
1 11 21 31 41 51
| | | | | |
1 MKLKLLNMIL SMMNKTNNNN NIIINNTLDS LMNKKLLLKN MLLDMNNKKM NNMKRMLNNN 60
61 NMNPAGANPV VHRIGPAGNI NNKLQHLNNM NNWNTQIYNY NKNMEIMNTM NDKLINKLLY 120
121 KMMTLKLNNM NINKIIMSKT INQHSLNKLN IKFYYYNNDI NNNNNNNNNN YYMNMMNKLM 180
181 NIMNNNMNNN LCNILSYYYK KKVTIEPIKL SYIYLNSDIF SKYISLNDMD KYNNGILTNY 240
241 QRMLNNIMPK LNDHNISMNY INNINNINNN KYNNMINLLN NNNNINNNN
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [290-398] |
1 11 21 31 41 51
| | | | | |
1 NYNNNNNNYI GNINNIYNNM TIDNIPMDIL MYKYLVGWSI KFKGRLSNNN GRTSTTNLLN 60
61 GTFNNKKYLW SNINNNYKLN YIPSNHNLYN NSNINKNGKY NIKVKLNFI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.597 | b.61.4 | Quinohemoprotein amine dehydrogenase A chain, domain 3 |
| View | Download | 0.508 | d.93.1 | SH2 domain |
| View | Download | 0.441 | b.61.4 | Quinohemoprotein amine dehydrogenase A chain, domain 3 |
| View | Download | 0.431 | d.110.3 | PYP-like sensor domain (PAS domain) |
| View | Download | 0.405 | b.61.4 | Quinohemoprotein amine dehydrogenase A chain, domain 3 |
