YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP6
Organism:	Saccharomyces cerevisiae
Length:	259 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP6.

Description	E-value	Query Range	Subject Range
gi\|629605, gi\|515963 - pir\|\|S42658 H+-transporting two-sector ATPase (EC 3.6.3.14) protein 6 precursor - radish mitochondri...	209.0	[0..10]	[259..175]
gi\|485452, gi\|13903 - pir\|\|S28918 H+-transporting two-sector ATPase (EC 3.6.3.14) protein 6 - maize mitochondrion, gi\|1390...	208.0	[0..11]	[259..163]
ATP61_ARATH - ATP synthase subunit a-1 OS=Arabidopsis thaliana GN=ATP6-1 PE=2 SV=2	199.0	[0..2]	[259..125]
gi\|13503, gi\|100761 - gi\|13503\|emb\|CAA40385.1\| mitochondrial ATPase subunit 6 protein [Sorghum bicolor], pir\|\|S17918 H+-tr...	189.0	[0..9]	[259..126]
gi\|71724856 - gi\|71724856\|gb\|AAZ38889.1\| ATP synthase subunit 6-2 [Capsicum annuum]	189.0	[0..9]	[259..165]
gi\|194033238, gi... - gi\|61097814\|dbj\|BAC19880.3\| ATP synthase F0 subunit 6 [Oryza sativa Japonica Group], gi\|194033238\|re...	188.0	[0..9]	[259..84]
gi\|563548, gi\|10... - gi\|563548\|emb\|CAA57790.1\| atp6 [Helianthus annuus], pir\|\|S52014 H+-transporting two-sector ATPase (E...	187.0	[0..10]	[259..185]
ATP6_TOBAC - ATP synthase subunit a OS=Nicotiana tabacum GN=ATP6 PE=3 SV=1	183.0	[0..11]	[259..131]
gi\|629789 - pir\|\|S42860 H+-transporting two-sector ATPase (EC 3.6.3.14) protein 6 - rice mitochondrion gi\|63056297, gi\|... - gi\|89280751\|ref\|YP_514657.1\| ATP synthase F0 subunit 6 [Oryza sativa Indica Group], gi\|74100118\|gb\|A... gi\|20160836, gi\|... - gi\|74100227\|gb\|AAZ99389.1\| ATP synthase F0 subunit 6 [Oryza sativa Japonica Group], gi\|74100173\|gb\|A...	182.0	[0..9]	[259..84]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFNLLNTYIT SPLDQFEIRT LFGLQSSFID LSCLNLTTFS LYTIIVLLVI TSLYTLTNNN  60
   61 NKIIGSRWLI SQEAIYDTIM NMTKGQIGGK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.864	a.7.14	Description not found.
View	Download	0.769	a.7.16	Description not found.
View	Download	0.751	a.24.9	alpha-catenin/vinculin
View	Download	0.746	a.46.1	Methionine synthase domain
View	Download	0.730	a.7.14	Description not found.
View	Download	0.728	a.46.1	Methionine synthase domain
View	Download	0.669	d.150.1	4'-phosphopantetheinyl transferase
View	Download	0.648	a.2.11	Fe,Mn superoxide dismutase (SOD), N-terminal domain
View	Download	0.614	a.2.2	Ribosomal protein L29 (L29p)
View	Download	0.612	a.24.2	Aspartate receptor, ligand-binding domain

Predicted Domain #2

Region A:
Residues: [91-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NWGLYFPMIF TLFMFIFIAN LISMIPYSFA LSAHLVFIIS LSIVIWLGNT ILGLYKHGWV  60
   61 FFSLFVPAGT PLPLVPLLVI IETLSYFARA ISLGLRLGSN ILAGHLLMVI LAGLTFNFML 120
  121 INLFTLVFGF VPLAMILAIM MLEFAIGIIQ GYVWAILTAS YLKDAVYLH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.221849
Match:	1c17M
Description:	F1F0 ATP synthase subunit A
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits