YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ATP8
Organism: Saccharomyces cerevisiae
Length: 48 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP8.

Description E-value Query
Range
Subject
Range
gi|6797726, gi|6... - gi|6797726|gb|AAD26163.3|AF114899_1 ATP synthase subunit 8 [Saccharomyces bayanus], gi|6797712|gb|AA...
51.0 [0..1] [48..1]
gi|7544634, gi|5... - gi|7544634|gb|AAA32148.2| ATPase subunit 3 (aap1) [Saccharomyces cerevisiae], gi|567918|gb|AAA67533....
51.0 [0..1] [48..1]
gi|224588078, gi... - gi|224588078|ref|YP_002640606.1| ATP synthase F0 subunit 8 [Saccharomyces pastorianus Weihenstephan ...
gi|6797718, gi|6... - gi|6797724|gb|AAD26165.3|AF114903_1 ATP synthase subunit 8 [Saccharomyces pastorianus], gi|6797718|g...
51.0 [0..1] [48..1]
gi|21263116, gi|... - gi|21263116|ref|NP_644683.1| ATP synthase subunit 8 [Saccharomyces castellii], gi|21105289|gb|AAM345...
50.0 [0..1] [48..1]
gi|57161735|emb|... - putative ATP synthase, subunit 8 [Kluyveromyces thermotolerans], putative ATP synthase, subunit 8 [K...
gi|57161735, gi|... - gi|57790529|ref|YP_184724.1| putative ATP synthase, subunit 8 [Kluyveromyces thermotolerans], gi|571...
49.0 [0..1] [48..1]
ATP8_KLULA - ATP synthase protein 8 OS=Kluyveromyces lactis GN=ATP8 PE=3 SV=1
ATP8_KLULA - ATP synthase protein 8 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 ...
49.0 [0..1] [48..1]

Back

Predicted Domain #1
Region A:
Residues: [1-48]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQLVPFYFM NQLTYGFLLM ITLLILFSQF FLPMILRLYV SRLFISKL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.801 a.8.1 Bacterial immunoglobulin/albumin-binding domains


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle