YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP8
Organism:	Saccharomyces cerevisiae
Length:	48 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP8.

Description	E-value	Query Range	Subject Range
gi\|6797726, gi\|6... - gi\|6797726\|gb\|AAD26163.3\|AF114899_1 ATP synthase subunit 8 [Saccharomyces bayanus], gi\|6797712\|gb\|AA...	51.0	[0..1]	[48..1]
gi\|7544634, gi\|5... - gi\|7544634\|gb\|AAA32148.2\| ATPase subunit 3 (aap1) [Saccharomyces cerevisiae], gi\|567918\|gb\|AAA67533....	51.0	[0..1]	[48..1]
gi\|224588078, gi... - gi\|224588078\|ref\|YP_002640606.1\| ATP synthase F0 subunit 8 [Saccharomyces pastorianus Weihenstephan ... gi\|6797718, gi\|6... - gi\|6797724\|gb\|AAD26165.3\|AF114903_1 ATP synthase subunit 8 [Saccharomyces pastorianus], gi\|6797718\|g...	51.0	[0..1]	[48..1]
gi\|21263116, gi\|... - gi\|21263116\|ref\|NP_644683.1\| ATP synthase subunit 8 [Saccharomyces castellii], gi\|21105289\|gb\|AAM345...	50.0	[0..1]	[48..1]
gi\|57161735\|emb\|... - putative ATP synthase, subunit 8 [Kluyveromyces thermotolerans], putative ATP synthase, subunit 8 [K... gi\|57161735, gi\|... - gi\|57790529\|ref\|YP_184724.1\| putative ATP synthase, subunit 8 [Kluyveromyces thermotolerans], gi\|571...	49.0	[0..1]	[48..1]
ATP8_KLULA - ATP synthase protein 8 OS=Kluyveromyces lactis GN=ATP8 PE=3 SV=1 ATP8_KLULA - ATP synthase protein 8 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 ...	49.0	[0..1]	[48..1]

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Predicted Domain #1

Region A:
Residues: [1-48]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQLVPFYFM NQLTYGFLLM ITLLILFSQF FLPMILRLYV SRLFISKL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.801	a.8.1	Bacterial immunoglobulin/albumin-binding domains

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits