YRC Public Data Repository - Protein Structure Prediction

Protein:	h0019632
Organism:	SPECIES UNKNOWN
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for h0019632.

Description	E-value	Query Range	Subject Range
gi\|109075704 - gi\|109075704\|ref\|XP_001089419.1\| PREDICTED: similar to short coiled-coil protein isoform 6 [Macaca m...	169.0	[0..1]	[122..1]
gi\|114596139 - gi\|114596139\|ref\|XP_001139435.1\| PREDICTED: similar to HRIHFB2072 isoform 4 [Pan troglodytes]	169.0	[0..24]	[122..61]
gi\|14211843, gi\|... - gi\|14211843\|ref\|NP_115936.1\| short coiled-coil protein [Homo sapiens], gi\|14042741\|dbj\|BAB55375.1\| u...	168.0	[0..1]	[122..1]
gi\|73983898 - gi\|73983898\|ref\|XP_848367.1\| PREDICTED: similar to short coiled-coil protein isoform 1 [Canis famili...	164.0	[0..1]	[122..1]
SCOC_RAT - Short coiled-coil protein OS=Rattus norvegicus GN=Scoc PE=2 SV=1	163.0	[0..1]	[122..1]
SCOC_MOUSE - Short coiled-coil protein OS=Mus musculus GN=Scoc PE=1 SV=1	159.0	[0..1]	[122..4]
gi\|76638444 - gi\|76638444\|ref\|XP_580345.2\| PREDICTED: similar to short coiled-coil protein [Bos taurus]	158.0	[0..1]	[122..1]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGSRKEEEE DSTFTNISLA DDIDHSSRIL YPRPKSLLPK MMNADMDAVD AENQVELEEK  60
   61 TRLINQVLEL QHTLEDLSAR VDAVKEENLK LKSENQVLGQ YIENLMSASS VFQTTDTKSK 120
  121 RK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.52
Match:	1gd2E
Description:	PAP1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits