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View Structure Prediction Details

Protein: h0016775
Organism: SPECIES UNKNOWN
Length: 828 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for h0016775.

Description E-value Query
Range
Subject
Range
COL6A2 - collagen, type VI, alpha 2
0.0 [1..823] [1..823]
gi|109065029, gi... - gi|109065031|ref|XP_001099130.1| PREDICTED: similar to alpha 2 type VI collagen isoform 2C2 precurso...
0.0 [1..823] [1..823]
gi|114684887 - gi|114684887|ref|XP_531504.2| PREDICTED: alpha 2 type VI collagen [Pan troglodytes]
0.0 [1..823] [158..963]
gi|109509328, gi... - gi|149043684|gb|EDL97135.1| procollagen, type VI, alpha 2, isoform CRA_a [Rattus norvegicus], gi|109...
0.0 [1..821] [7..829]
CO6A2_MOUSE - Collagen alpha-2(VI) chain OS=Mus musculus GN=Col6a2 PE=1 SV=3
0.0 [1..821] [6..836]

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Predicted Domain #1
Region A:
Residues: [1-161]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQGTCSVLL LWGILGAIQA QQQEVISPDT TERNNNCPEK TDCPIHVYFV LDTSESVTMQ  60
   61 SPTDILLFHM KQFVPQFISQ LQNEFYLDQV ALSWRYGGLH FSDQVEVFSP PGSDRASFIK 120
  121 NLQGISSFRR GTFTDCALAN MTEQIRQDRS KGTVHFAVVI T

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.86
Match: 1fe8A
Description: von Willebrand factor A3 domain, vWA3
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [162-518]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGHVTGSPCG GIKLQAERAR EEGIRLFAVA PNQNLKEQGL RDIASTPHEL YRNDYATMLP  60
   61 DSTEIDQDTI NRIIKVMKHE AYGECYKVSC LEIPGPSGPK GYRGQKGAKG NMGEPGEPGQ 120
  121 KGRQGDPGIE GPIGFPGPKG VPGFKGEKGE FGADGRKGAP GLAGKNGTDG QKGKLGRIGP 180
  181 PGCKGDPGNR GPDGYPGEAG SPGERGDQGG KGDPGRPGRR GPPGEIGAKG SKGYQGNSGA 240
  241 PGSPGVKGAK GGPGPRGPKG EPGRRGDPGT KGSPGSDGPK GEKGDPGPEG PRGLAGEVGN 300
  301 KGAKGDRGLP GPRGPQGALG EPGKQGSRGD PGDAGPRGDS GQPGPKGDPG RPGFSYP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 32.69897
Match: 1y0fB
Description: No description for 1y0fB was found.

Predicted Domain #3
Region A:
Residues: [519-593]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPRGAPGEKG EPGPRGPEGG RGDFGLKGEP GRKGEKGEPA DPGPPGEPGP RGPRGVPGPE  60
   61 GEPGPPGDPG LTECD

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.8
Match: 1wckA
Description: Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore.
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [594-828]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VMTYVRETCG CCDCEKRCGA LDVVFVIDSS ESIGYTNFTL EKNFVINVVN RLGAIAKDPK  60
   61 SETGTRVGVV QYSHEGTFEA IQLDDERIDS LSSFKEAVKN LEWIAGGTWT PSALKFAYDR 120
  121 LIKESRRQKT RVFAVVITDG RHDPRDDDLN LRALCDRDVT VTAIGIGDMF HEKHESENLY 180
  181 SIACDKPQQV RNMTLFSDLV AEKFIDDMED VLCPDPQIVC PDLPCQTGLD GAVLC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.522879
Match: 1uexC
Description: Crystal structure of von Willebrand Factor A1 domain complexed with snake venom bitiscetin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.0650247416983729 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle