YRC Public Data Repository - Protein Structure Prediction

Protein:	Y2666_ERWCT
Organism:	Pectobacterium atrosepticum
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y2666_ERWCT.

Description	E-value	Query Range	Subject Range
Y734_NITMU - UPF0145 protein Nmul_A0734 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=Nmul_A07...	148.0	[0..1]	[106..1]
gi\|18073211 - gi\|18073211\|emb\|CAC80661.1\| hypothetical protein (conserved) [Listeria ivanovii]	148.0	[0..1]	[106..11]
gi\|37200483, gi\|... - gi\|37675943\|ref\|NP_936339.1\| hypothetical protein VVA0283 [Vibrio vulnificus YJ016], gi\|37200483\|dbj...	148.0	[0..1]	[106..16]
gi\|83945197, gi\|... - gi\|83945197\|ref\|ZP_00957546.1\| hypothetical protein OA2633_00480 [Oceanicaulis alexandrii HTCC2633],...	148.0	[0..1]	[105..1]
gi\|118723107, gi... - gi\|18073203\|emb\|CAC80654.1\| hypothetical protein (conserved) [Listeria innocua], gi\|118723123\|gb\|ABL...	147.0	[0..1]	[106..11]
Y1032_NITEU - UPF0145 protein NE1032 OS=Nitrosomonas europaea GN=NE1032 PE=3 SV=1 Y1032_NITEU - UPF0145 protein NE1032 OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=NE1032 PE=3 SV=1	147.0	[0..1]	[106..1]
YBJQ_SALCH - UPF0145 protein ybjQ OS=Salmonella choleraesuis GN=ybjQ PE=3 SV=1 YBJQ_SALPA - UPF0145 protein ybjQ OS=Salmonella paratyphi A GN=ybjQ PE=3 SV=1 YBJQ_SALPB - UPF0145 protein YbjQ OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ybjQ PE=3 SV=1 YBJQ_SALPB - UPF0145 protein ybjQ OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ybjQ PE=3 SV=1 YBJQ_SALAR - UPF0145 protein YbjQ OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=ybjQ PE=3... gi\|168466511, gi... - gi\|195631013\|gb\|EDX49599.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205343122, gi... - gi\|205343122\|gb\|EDZ29886.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... YBJQ_SALNS - UPF0145 protein YbjQ OS=Salmonella newport (strain SL254) GN=ybjQ PE=3 SV=1 YBJQ_SALHS - UPF0145 protein YbjQ OS=Salmonella heidelberg (strain SL476) GN=ybjQ PE=3 SV=1 gi\|168230800, gi... - gi\|205334839\|gb\|EDZ21603.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|197290130, gi... - gi\|197290130\|gb\|EDY29487.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168240774, gi... - gi\|205340382\|gb\|EDZ27146.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205347708, gi... - gi\|205347708\|gb\|EDZ34339.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|167550398, gi... - gi\|205324537\|gb\|EDZ12376.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|167992146, gi... - gi\|205329672\|gb\|EDZ16436.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|213647848 - gi\|213647848\|ref\|ZP_03377901.1\| hypothetical protein SentesTy_11524 [Salmonella enterica subsp. ente... gi\|238913410 - gi\|238913410\|ref\|ZP_04657247.1\| hypothetical protein SentesTe_20096 [Salmonella enterica subsp. ente... gi\|213852495 - gi\|213852495\|ref\|ZP_03382027.1\| hypothetical protein SentesT_06229 [Salmonella enterica subsp. enter... gi\|214000338 - gi\|214000338\|ref\|ZP_03411073.1\| hypothetical protein Salmonellentericaenterica_06756 [Salmonella ent... gi\|228555149, gi... - gi\|228555149\|gb\|EEK19814.1\| hypothetical protein CIT292_03381 [Citrobacter youngae ATCC 29220], gi\|2... gi\|237732148, gi... - gi\|237732148\|ref\|ZP_04562629.1\| ybjQ [Citrobacter sp. 30_2], gi\|226907687\|gb\|EEH93605.1\| ybjQ [Citro... YBJQ_SALEP - UPF0145 protein YbjQ OS=Salmonella enteritidis PT4 (strain P125109) GN=ybjQ PE=3 SV=1 lcl\|NC_016856.1_... - [gene=orfB] [protein=hypothetical protein] [protein_id=YP_005236636.1] [location=963696..964019] gi\|213052703 - gi\|213052703\|ref\|ZP_03345581.1\| hypothetical protein Salmoneentericaenterica_07186 [Salmonella enter... gi\|213421261 - gi\|213421261\|ref\|ZP_03354327.1\| hypothetical protein Salmonentericaenterica_27429 [Salmonella enteri... gi\|213428036 - gi\|213428036\|ref\|ZP_03360786.1\| hypothetical protein SentesTyphi_22120 [Salmonella enterica subsp. e... YBJQ_SALPK - UPF0145 protein YbjQ OS=Salmonella paratyphi A (strain AKU_12601) GN=ybjQ PE=3 SV=1 gi\|200390946, gi... - gi\|200390946\|ref\|ZP_03217557.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|204929855, gi... - gi\|204929855\|ref\|ZP_03220876.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YBJQ_SALCH - UPF0145 protein ybjQ OS=Salmonella choleraesuis GN=ybjQ PE=3 SV=1 YBJQ_SALG2 - UPF0145 protein YbjQ OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=ybjQ PE=3 SV=1 YBJQ_SALTY - UPF0145 protein ybjQ OS=Salmonella typhimurium GN=ybjQ PE=3 SV=1 gi\|194458536, gi... - gi\|194472172\|ref\|ZP_03078156.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YBJQ_SALSV - UPF0145 protein YbjQ OS=Salmonella schwarzengrund (strain CVM19633) GN=ybjQ PE=3 SV=1 YBJQ_SALA4 - UPF0145 protein YbjQ OS=Salmonella agona (strain SL483) GN=ybjQ PE=3 SV=1 gi\|197265011, gi... - gi\|197265011\|ref\|ZP_03165085.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YBJQ_SALTY - UPF0145 protein YbjQ OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ybjQ PE=3 SV... gi\|29142424, gi\|... - gi\|29142424\|ref\|NP_805766.1\| hypothetical protein t2003 [Salmonella enterica subsp. enterica serovar... YBJQ_SALTY - UPF0145 protein ybjQ OS=Salmonella typhimurium GN=ybjQ PE=3 SV=1 YBJQ_SALTI - UPF0145 protein ybjQ OS=Salmonella typhi GN=ybjQ PE=3 SV=1 YBJQ_SALTI - UPF0145 protein YbjQ OS=Salmonella typhi GN=ybjQ PE=3 SV=1 gi\|16759803 - gi\|16759803\|ref\|NP_455420.1\| hypothetical protein STY0926 [Salmonella enterica subsp. enterica serov... YBJQ_SALCH - UPF0145 protein YbjQ OS=Salmonella choleraesuis (strain SC-B67) GN=ybjQ PE=3 SV=1 YBJQ_SALPA - UPF0145 protein YbjQ OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=ybjQ PE=3 SV=1	147.0	[0..1]	[107..1]
YBJQ_ECOHS - UPF0145 protein YbjQ OS=Escherichia coli O9:H4 (strain HS) GN=ybjQ PE=3 SV=1 gi\|217320881, gi... - gi\|217324660\|ref\|ZP_03440744.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|194428209, gi... - gi\|75210538\|ref\|ZP_00710686.1\| COG0393: Uncharacterized conserved protein [Escherichia coli B171], g... gi\|4062446, gi\|8... - gi\|89107717\|ref\|AP_001497.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|406... YBJQ_ECO8A - UPF0145 protein YbjQ OS=Escherichia coli O8 (strain IAI1) GN=ybjQ PE=3 SV=1 YBJQ_SHIB3 - UPF0145 protein YbjQ OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ybjQ PE=3 SV=1 YBJQ_ECOUT - UPF0145 protein YbjQ OS=Escherichia coli (strain UTI89 / UPEC) GN=ybjQ PE=3 SV=1 YBJQ_ECO45 - UPF0145 protein YbjQ OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ybjQ PE=3 SV=1 YBJQ_ECO24 - UPF0145 protein YbjQ OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ybjQ PE=3 SV=1 gi\|15830206, gi\|... - gi\|15830206\|ref\|NP_308979.1\| hypothetical protein ECs0952 [Escherichia coli O157:H7 str. Sakai], gi\|... YBJQ_ECO81 - UPF0145 protein YbjQ OS=Escherichia coli O81 (strain ED1a) GN=ybjQ PE=3 SV=1 gi\|191172111, gi... - gi\|75240930\|ref\|ZP_00724819.1\| COG0393: Uncharacterized conserved protein [Escherichia coli F11], gi... YBJQ_ECO55 - UPF0145 protein YbjQ OS=Escherichia coli (strain 55989 / EAEC) GN=ybjQ PE=3 SV=1 gi\|75257535, gi\|... - gi\|75257535\|ref\|ZP_00729032.1\| COG0393: Uncharacterized conserved protein [Escherichia coli E22], gi... YBJQ_ECOLU - UPF0145 protein YbjQ OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ybjQ PE=3 SV=1 gi\|191166214, gi... - gi\|75230716\|ref\|ZP_00717187.1\| COG0393: Uncharacterized conserved protein [Escherichia coli B7A], gi... gi\|193069336, gi... - gi\|75236077\|ref\|ZP_00720201.1\| COG0393: Uncharacterized conserved protein [Escherichia coli E110019]... gi\|189377732, gi... - gi\|189377732\|gb\|EDU96148.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... YBJQ_ECODH - UPF0145 protein YbjQ OS=Escherichia coli (strain K12 / DH10B) GN=ybjQ PE=3 SV=1 gi\|208806844, gi... - gi\|208806844\|ref\|ZP_03249181.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|208815075, gi... - gi\|208815075\|ref\|ZP_03256254.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... YBJQ_ECOL5 - UPF0145 protein YbjQ OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ybjQ PE=3 SV=1 gi\|208737544, gi... - gi\|208822059\|ref\|ZP_03262378.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|83586179, gi\|... - gi\|83586179\|ref\|ZP_00924816.1\| COG0393: Uncharacterized conserved protein [Escherichia coli 101-1], ... YBJQ_SHIF8 - UPF0145 protein YbjQ OS=Shigella flexneri serotype 5b (strain 8401) GN=ybjQ PE=3 SV=1 YBJQ_ECOLC - UPF0145 protein YbjQ OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=ybjQ PE=3 SV=1 YBJQ_ECO5E - UPF0145 protein YbjQ OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ybjQ PE=3 SV=1 gi\|254792067, gi... - gi\|254792067\|ref\|YP_003076904.1\| hypothetical protein ECSP_0971 [Escherichia coli O157:H7 str. TW143... YBJQ_ECOSE - UPF0145 protein YbjQ OS=Escherichia coli (strain SE11) GN=ybjQ PE=3 SV=1 gi\|253972882, gi... - gi\|254160981\|ref\|YP_003044089.1\| hypothetical protein ECB_00871 [Escherichia coli B str. REL606], gi... YBJQ_ECO27 - UPF0145 protein YbjQ OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ybjQ PE=3 SV=1 gi\|253325148, gi... - gi\|254287789\|ref\|YP_003053537.1\| hypothetical protein ECD_00871 [Escherichia coli BL21(DE3)], gi\|253... gi\|242376681, gi... - gi\|251784408\|ref\|YP_002998712.1\| hypothetical protein B21_00877 [Escherichia coli BL21], gi\|24237668... YBJQ_ECOBW - UPF0145 protein YbjQ OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=ybjQ PE=3 SV=1 gi\|237707170, gi... - gi\|237707170\|ref\|ZP_04537651.1\| ybjQ [Escherichia sp. 3_2_53FAA], gi\|226898380\|gb\|EEH84639.1\| ybjQ [... gi\|227884170, gi... - gi\|227884170\|ref\|ZP_04001975.1\| protein of hypothetical function DUF74 [Escherichia coli 83972], gi\|... YBJQ_ECOL6 - UPF0145 protein YbjQ OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ybjQ PE=3 SV=... EG13686 - UPF0145 family protein / Conserved protein, UPF0145 family, function unknown YBJQ_ECO57 - UPF0145 protein YbjQ OS=Escherichia coli O157:H7 GN=ybjQ PE=3 SV=1 gi\|12513893, gi\|... - gi\|15800624\|ref\|NP_286638.1\| hypothetical protein Z1099 [Escherichia coli O157:H7 EDL933], gi\|125138... gi\|168750058, gi... - gi\|188015685\|gb\|EDU53807.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168756668, gi... - gi\|189356301\|gb\|EDU74720.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|189366523, gi... - gi\|189366523\|gb\|EDU84939.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168767384, gi... - gi\|189363556\|gb\|EDU81975.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168776415, gi... - gi\|187768219\|gb\|EDU32063.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168779426, gi... - gi\|189002982\|gb\|EDU71968.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|189373132, gi... - gi\|189373132\|gb\|EDU91548.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... YBJQ_ECOK1 - UPF0145 protein YbjQ OS=Escherichia coli O1:K1 / APEC GN=ybjQ PE=3 SV=1 gi\|124501468, gi... - gi\|124527123\|ref\|ZP_01698960.1\| protein of unknown function DUF74 [Escherichia coli B], gi\|124501468... EG13686 - UPF0145 family protein / Conserved protein, UPF0145 family, function unknown sp\|B7UMV8\|YBJQ_ECO27 - UPF0145 protein ybjQ OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ybjQ PE=3 SV=1 YBJQ_ECOL6 - UPF0145 protein ybjQ OS=Escherichia coli O6 GN=ybjQ PE=3 SV=1 YBJQ_ECOLI - UPF0145 protein ybjQ - Escherichia coli YBJQ_SHIDS - UPF0145 protein YbjQ OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ybjQ PE=3 SV=1 YBJQ_SHIBS - UPF0145 protein YbjQ OS=Shigella boydii serotype 4 (strain Sb227) GN=ybjQ PE=3 SV=1 gi\|188495577, gi... - gi\|75512872\|ref\|ZP_00735364.1\| COG0393: Uncharacterized conserved protein [Escherichia coli 53638], ... YBJQ_SHISS - UPF0145 protein YbjQ OS=Shigella sonnei (strain Ss046) GN=ybjQ PE=3 SV=1	146.0	[0..1]	[107..1]
tr\|A2PRH7\|A2PRH7... - UPF0145 protein DN30_169 OS=Vibrio cholerae GN=DN30_169 PE=3 SV=1, UPF0145 protein A51_C0935 OS=Vibr... gi\|229336657, gi... - gi\|229526499\|ref\|ZP_04415903.1\| hypothetical protein VCA_000627 [Vibrio cholerae bv. albensis VL426]... gi\|229514363, gi... - gi\|229514363\|ref\|ZP_04403824.1\| hypothetical protein VCB_002013 [Vibrio cholerae TMA 21], gi\|2293483... gi\|125622808, gi... - gi\|75821030\|ref\|ZP_00751066.1\| COG0393: Uncharacterized conserved protein [Vibrio cholerae V51], gi\|... gi\|153801413, gi... - gi\|153801413\|ref\|ZP_01955999.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124123079...	146.0	[0..1]	[106..1]

Back

Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLSTTPNLE GFTITEYCGV VTGEAILGAN IFRDFFASIR DVVGGRSGAY EKELRKARQI  60
   61 AFKELQEQAE DLGANAIVGI DLDYETVGKD GSMLMVTVSG TAVKVRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.522879
Match:	1y2iA
Description:	Crystal Structure of MCSG Target APC27401 from Shigella flexneri
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits