YRC Public Data Repository - Protein Structure Prediction

Protein:	TIP39_BOVIN
Organism:	Bos taurus
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIP39_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|109461908, gi... - gi\|62639714\|ref\|XP_574444.1\| PREDICTED: similar to tuberoinfundibular peptide of 39 residues preproh...	1.0E-32	[1..100]	[1..100]
TIP39_MOUSE - Tuberoinfundibular peptide of 39 residues OS=Mus musculus GN=Pth2 PE=1 SV=1 gi\|147897861, gi... - gi\|147897861\|gb\|AAI40227.1\| Parathyroid hormone 2 [synthetic construct], gi\|146327705\|gb\|AAI41613.1\|... TIP39_RAT - Tuberoinfundibular peptide of 39 residues OS=Rattus norvegicus GN=Pth2 PE=2 SV=1	1.0E-32	[1..100]	[1..100]
gi\|73947986 - gi\|73947986\|ref\|XP_854766.1\| PREDICTED: similar to tuberoinfundibular 39 residue protein precursor [...	1.0E-29	[1..99]	[42..139]
gi\|76642113 - gi\|76642113\|ref\|XP_875079.1\| PREDICTED: similar to tuberoinfundibular 39 residue protein precursor [...	4.0E-29	[1..100]	[157..254]
gi\|109125499 - gi\|109125499\|ref\|XP_001114966.1\| PREDICTED: similar to tuberoinfundibular 39 residue protein precurs...	2.0E-26	[1..99]	[1..97]
gi\|15911837 - gi\|15911837\|gb\|AAL06597.1\| tuberoinfundibular 39 residue protein precursor [Homo sapiens]	1.0E-22	[1..85]	[1..85]
gi\|34592154 - gi\|34592154\|gb\|AAQ76286.1\| tuberoinfundibular peptide Tip39 splice variant [Danio rerio]	1.0E-16	[51..99]	[87..135]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METRQVSRSP RVRLLLLLLL LLVVPWGVRT ASGVALPPVG VLSLRPPGRA WADPATPRPR  60
   61 RSLALADDAA FRERARLLAA LERRHWLNSY MHKLLVLDAP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits