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View Structure Prediction Details

Protein: gi|57114406
Organism: Oryza sativa Japonica Group
Length: 804 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|57114406.

Predicted Domain #1
Region A:
Residues: [1-226]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPFCCVPPV PVSPAASAAA AATPAASSAV AGAPAVMPPP PPPLPPPPPR SNSAPPERRA  60
   61 LRWAAGGGSG GGNSPPEGVK LNEIVGGGIS GILYKWVNYG RGWRPRWFAL HDGVLSYYKI 120
  121 HGPDRIVLSR ETERGAKVIG EDSLRRLSRP STSSSSSAHS NGHHLPRKPI GEIHLKVSSV 180
  181 RESRSDDRRF SIFSGTKRLH LRAETREDRA AWVEALQATK EMFPRM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.154902
Match: 2r09A
Description: No description for 2r09A was found.

Predicted Domain #2
Region A:
Residues: [227-406]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STSEMVGPGD TAAAVAVSTE RLRQRLQQEG VSEAAIADSE RIVRTEFEVL HKQLMLLKQK  60
   61 QTLLLDTLRQ LETEKVDLEN TLVDESQRQS KEYGSTSRSK NEKYSEGSAS ESDDYNEPQD 120
  121 PAEDETDDDE NIYFDTRDFL SSSSFKSSGS DFQRSEAGSD DEDDYPMDGI DTSMKSVGIS 180
  181 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [407-804]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPYVRRRKKL PDPVEKEKGV SLWSMIKDNI GKDLTKVCLP VYFNEPLSSL QKCFEDLEYS  60
   61 YLIDRAYEWG KRGNSLMRIL SVAAFAVSGY ASTDGRSCKP FNPLLGETYE ADYPDKGLRF 120
  121 FSEKVSHHPM VVACHCEGTG WRFWADSNLK SKFWGRSIQL DPVGVLTLEF DDGEVFQWSK 180
  181 VTTSIYNLIL GKLYCDHYGT MRIQGNNEYS CKLKFKEQSI IDRNPHQVQG VVQDRSGRTV 240
  241 ATLFGKWDES MHYVMGDCFG KGKGSENFSE AHLLWKRSKP PKFPTRYNFT RFAITLNELT 300
  301 AGLKEKLPPT DSRLRPDQRC LENGEYERAN AEKLRLEQRQ RQARKMQESG WKPRWFAKDK 360
  361 ATDTYRYLGG YWESREKGSW EGCPDIFGQV PNDLMITD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.39794
Match: 1zhtA
Description: Structure of yeast oxysterol binding protein Osh4 in complex with 7-hydroxycholesterol
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle