YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|47118332, gi|...
Organism: Oryza sativa Japonica Group
Length: 236 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|47118332, gi|....

Description E-value Query
Range
Subject
Range
gi|162461824, gi... - gi|40217512|dbj|BAD05165.1| MinE [Zea mays], gi|162461824|ref|NP_001104870.1| minE protein [Zea mays...
309.0 [0..3] [235..1]
gi|71089835 - gi|71089835|gb|AAZ23774.1| plastid division regulator MinE [Hordeum vulgare]
308.0 [0..1] [236..1]
MINE1_ARATH - Cell division topological specificity factor homolog, chloroplastic OS=Arabidopsis thaliana GN=MINE1...
264.0 [0..5] [233..1]
gi|71089833 - gi|71089833|gb|AAZ23773.1| plastid division regulator MinE [Brassica napus]
262.0 [0..5] [233..1]
gi|71089837 - gi|71089837|gb|AAZ23775.1| plastid division regulator MinE [Glycine max]
260.0 [0..5] [234..1]
gi|67518073 - gi|67518073|gb|AAY68293.1| chloroplast division site regulator [Physcomitrella patens]
193.0 [0..21] [228..35]
MINE_PROMM - Cell division topological specificity factor OS=Prochlorococcus marinus (strain MIT 9313) GN=minE PE...
132.0 [0..105] [224..1]
gi|4775296 - gi|4775296|emb|CAB42593.1| putative MINE protein [Auxenochlorella protothecoides]
128.0 [0..100] [235..69]
MINE_PROMT - Cell division topological specificity factor OS=Prochlorococcus marinus (strain NATL2A) GN=minE PE=3...
127.0 [0..105] [222..1]

Back

Predicted Domain #1
Region A:
Residues: [1-117]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMATSISAG FGGEPGAVLA PSASVLPAPR RRNPATSSKA QFSSFPRGRS CNIMLTPKHL  60
   61 GIEHQSCSKS SIQTFALSRN DFSPIAQEVE GFLHNIVNMG FLDRLKLAWK IIFPAPS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [118-236]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IKENSNANIA KQRLKMILFS DRCEVSDEAK KKIVENIVEA LSEFVEIESR DNVQVDISTD  60
   61 AGLGTVYSVT VPVRRVKPEY QESEEQYRGK IVGVDFKDTG ETSGSVDVTF DFFVPNKNY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 15.221849
Match: 1ev0A
Description: Cell division protein MinE topological specificity domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle