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View Structure Prediction Details

Protein: gi|56236078, gi|...
Organism: Arabidopsis thaliana
Length: 562 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|56236078, gi|....

Predicted Domain #1
Region A:
Residues: [1-213]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKREHLGLG FFEWQIILWL SIWLAISQQA LGLRPIREKP RSWSDEWLFG RKQEAEVGPF  60
   61 SAWNITGTYR GTWKFLNSLN SSSKFQDFQK ENGNSVVELV AVPTKITGVH YVQGVVVFHD 120
  121 VFDNEQNVGG AQINLEGVYI WPFRQLRLVA NSGKESDSGQ EDNNLLSNPY HLLGIFSSQV 180
  181 FQESPRDRLL KRKLSPVNEM EKHCNIEIAA QVS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [214-562]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVASSENNGD KNYYHMEGLM ESPGVGDDGD CFSPLLLNAT SVNVEVYYNK AVNYTLMVTF  60
   61 VSFLQVLLLI RQMEHGNTQS GAAKVSIVMI GQQAIMDAYL CLLHLTAGIL VESLFNAFAT 120
  121 AAFFKFVVFS IFEMRYLLAI WKATRPSNSG EGWETMRREL SFLYSRFYGI LLGGILIMYQ 180
  181 FHNYMQPILL LMYSFWIPQI VANVVRDSRK PLHPYYILGM TATRLAIPLY VFGCPHNFMR 240
  241 VEPNKVWCIC LCTFMGLQAV ILLLQHYFGS RCFVPRQMLP EKYNYHRRFN RDVSRTTDCV 300
  301 ICMTAIDLRQ HTSDCMVTPC EHFFHSGCLQ RWMDIKMECP TCRRSLPPA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.69897
Match: 1fbvA
Description: Cbl; N-terminal domain of cbl (N-cbl); CBL
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle