YRC Public Data Repository - Protein Structure Prediction

Protein:	ESP1_ARATH
Organism:	Arabidopsis thaliana
Length:	2180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ESP1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|7486567, gi\|7... - pir\|\|T05128 hypothetical protein F7H19.150 - Arabidopsis thaliana, gi\|7269144\|emb\|CAB79252.1\| putat...	1092.0	[0..790]	[1377..578]
gi\|46805323, gi\|... - gi\|50913197\|ref\|XP_468006.1\| cell division-associated protein BIMB-like [Oryza sativa (japonica cult...	876.0	[0..1269]	[2168..81]
gi\|42551791, gi\|... - gi\|46122253\|ref\|XP_385680.1\| hypothetical protein FG05504.1 [Gibberella zeae PH-1], gi\|42551791\|gb\|E...	514.0	[0..1492]	[2168..1456]
gi\|66851304, gi\|... - gi\|70997872\|ref\|XP_753668.1\| separin [Aspergillus fumigatus Af293], gi\|66851304\|gb\|EAL91630.1\| separ...	486.0	[0..1494]	[2167..1502]
gi\|67903592, gi\|... - gi\|67903592\|ref\|XP_682052.1\| BIMB_EMENI CELL DIVISION-ASSOCIATED PROTEIN BIMB [Aspergillus nidulans ...	484.0	[0..1494]	[2167..1460]
BIMB_EMENI - Separin OS=Emericella nidulans GN=bimB PE=3 SV=1	484.0	[0..1494]	[2167..1476]
gi\|85080717 - gi\|85080717\|ref\|XP_956590.1\| hypothetical protein NCU00205 [Neurospora crassa OR74A] gi\|28917660, gi\|... - gi\|32403356\|ref\|XP_322291.1\| hypothetical protein [Neurospora crassa], gi\|28917660\|gb\|EAA27354.1\| pr...	482.0	[0..1483]	[2165..1494]
gi\|38110580, gi\|... - gi\|39976685\|ref\|XP_369730.1\| hypothetical protein MG06245.4 [Magnaporthe grisea 70-15], gb\|EAA56274....	479.0	[0..1492]	[2165..1483]
gi\|83765215 - gi\|83765215\|dbj\|BAE55358.1\| unnamed protein product [Aspergillus oryzae] gi\|169765778 - gi\|169765778\|ref\|XP_001817360.1\| hypothetical protein [Aspergillus oryzae RIB40]	479.0	[0..1494]	[2167..1493]
gi\|90304057, gi\|... - gi\|90304057\|gb\|EAS33688.1\| hypothetical protein CIMG_04712 [Coccidioides immitis RS], gi\|119189329\|r...	477.0	[0..1477]	[2165..1470]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSGDDLRL LSLIDVGDNV FSSFSDYLKP FSTLSTSRKK QDRATTIRAL AKQFLPFLNK  60
   61 SISLLPKRLS VANSDKEARE SALDLFRAYE LCLDCLELVS AQLACKPHTV QSQRLRMIHC 120
  121 LDVWGLYENV YTEAFKVLEK LRGSDSKSRK SRLLPEVQD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [160-325]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDAEMALVVV DAVAAIFRAV AMSQQLDDKR YRKVLLLLEE VGGWLRVLDA KVYEKLHRAM  60
   61 VTSMGKCAVS LVREAERFNG DLVISFCDLT VKEHYKSALS KDRVYKFARE VLSVLFGFKD 120
  121 RKMSVTIDIS MSVLRSLSCQ FEDESNENLM EFFDLVDYCA HKFRAA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [326-415]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GDMYCAKVSK KLNEMAAIFV EAIPQLNLVL RLYSTGLSIT VCNSKLGEIK LEDSTDDWKI  60
   61 QAMFDDDARW QSLVSLLGMV DSYSGDEGNQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [416-607]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGSSSIGGHR NYNNKTHDSC KDRNKITCWP QYVDALKFLC QPLADFIYSV KRKIVLETEM  60
   61 SCASAHLITI HDAFLQFCDG CLFLQRCTSD KGDREIANNK AFLNAAMGAF IVSLRTQLKL 120
  121 EISAHLVEDV IGSPWIQSQE LKYLIATLYN IGIVLYRNKE LNKACEALKL CSKVSWRCVE 180
  181 LHCHMFVNQS SS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [608-800]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDNDLSEDAI MDFVGEACNR CAFYLDILQK CSRRKIRQNI VHILENWLSA EHLIRRLPGP  60
   61 EAIVKQWVKI ERECHTDLDA AGSCTTLYSL LSSSQKKSKR GIGKILEQEL LAYDRVLPLR 120
  121 SNLGQQTRIK IADILLKDVY VTEDMHIERA RILIWKARMT RTSGTEHITE CICFLSEAIS 180
  181 ILGELHHGPN EEG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [801-966]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPSSHMLPIA YCLRAFCTQE ADPNSKKVFQ DISTSLNLWL RILSLDDSGD SLPTENIIPL  60
   61 LYNMIDLMSV KGCTELHHHI YQLIFRLFKW KNVKLEVCLA MLWECRRLSH ALCPSPISDA 120
  121 FIQTLSENCA DKSTCIDFWM DCLKDSKAKL IGFQQNFHDL HNKDEG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7

Region A:
Residues: [967-1078]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFQSDITIDD IKDAASELIS SASLSGNSSF AAAYLYYDLC ERLISFGKLS EALSYAKEAY  60
   61 RIRTLIFQDK FKYTAEKHIE KHNEDGKISE IRTFSIKNFQ VYRLLATDFW PC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8

Region A:
Residues: [1079-1267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNFLWDINRC YLSPWSVLQC YLESTLQVGI LNELIGNGLE AETILSWGKA FSCSQSLFPF  60
   61 VVAFSSALGN LYHKKQCLDL AEKELQNAKE ILIANQRDFS CVKCKLKLEV TLDKQLGDIS 120
  121 RKQIDRVSQT DGFLHAESLF SAALGKFCCS AWKSCIRSHG EEIAEEIVID RNGGEGLGHN 180
  181 SSKTKLSIK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #9

Region A:
Residues: [1268-1481]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPPGNRGSRR GGRANKTCLS KDQDLISEPT SRLTRSMRHS LREQCQNRSN VPEVVSKKPN  60
   61 LCDRSVGSRG ERVLLDTSNA LPGFCICYKE KRQQCLSEEV TESGSLNNLV SLKWELCHRK 120
  121 LASSILVSLG KCLGDSGRIH LAHEALLHSI SVLFKSTWSS HNQPSVSQLL EFIGKEVTRD 180
  181 VFAVDRAIIL YNLCWLNLRN YHCRKSRSIC CDLF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #10

Region A:
Residues: [1482-1691]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HIPFTKLVSW LMLAFVLSGE VPILFQKVSR LLASLYLLSS SNSEFTFESD GNELSASHWV  60
   61 SFFHQASLGT HLSYHFISNL SQKHKSQCLS DKECTEATCS SCMVPEDLDL PRLAPDRTQD 120
  121 LVQFAKEFFI NLPSSTIICI SLLGGALNQL LQELMHIRSP VCAWVLISRL NPESQPVATL 180
  181 LPVDSIVEDM SDDSANLSST EATQVKSLKG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #11

Region A:
Residues: [1692-1804]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PWLCPWGTTV VDEVAPAFKS ILEESHSSSS TTEEDTIESR GLWWKKRKKL NHRLGIFLRN  60
   61 LEASWLGPWR CLLLGEWSNY KLPDSAQKKL VNDLKSKCKM EVNEMLLKVI LGG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #12

Region A:
Residues: [1805-2010]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTDNFKGEAC VAQLSLRNGC YVGRGGYLYE EDSCKTPTAA SNISESRHEL ALKLIHDAAS  60
   61 KLGQQDGHEN REPIILVLDP EVQMLPWENI PILRKQEVYR MPSVGCISAV LKKRSLQGEP 120
  121 AKSHVASFPL IDPLDSFYLL NPGGDLTDTQ VTFESWFRDQ NFEGKAGSEP SAIELTEALE 180
  181 THDLFLYFGH GSGAQYIPRR EIEKLD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #13

Region A:
Residues: [2011-2080]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NCSATFLMGC SSGSLWLKGC YIPQGVPLSY LLGGSPAIVA TLWDVTDRDI DRFGKALLEA  60
   61 WLQERSDSSS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #14

Region A:
Residues: [2081-2180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGGCSQCESL ANDLAAMTLK GTKRSRKPSS RNKPAQSDVD GSGKIECNHK HRRKIGSFIA  60
   61 AARDACNLQY LIGAAPVCYG VPTGITRKKG IDALLPSSSR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits