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View Structure Prediction Details

Protein: gi|56236064, gi|...
Organism: Arabidopsis thaliana
Length: 461 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|56236064, gi|....

Predicted Domain #1
Region A:
Residues: [1-104]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIAQSLLWK EITLLKKIQH MVLSLTESGA RLFVTRFLEQ FISIGCVTIL EEGGTMFIFG  60
   61 EKDSTCPLKS ILKIHSPQFY WKVMTQADLG LADAYISGDF SFVD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [105-379]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDSGLLNLIM ILIANRDQRS PKSNLVKKRG WWTPVFLTAG LASVKYYLKH VLKQNTLTQA  60
   61 RKNISSHYDL SNEFFGLFMD DTMMYSSAIF KSENEDPRTA QMRKISLLIE KARIEKNHEV 120
  121 LEMGCGWGTF AIEVVKRTGC KYTGITLSIE QLKYAKAKVK EAGLQGRITF MLCDYRQLSD 180
  181 ARKYDRIIAC EMIEAVGHEF MDKFFSCCED ALAENGIFVL QFTAIPEALY DESRLTSGFI 240
  241 TEYIFPGGCL PSLARVTSAM ASSSRLCIEN VENIG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.522879
Match: 1tw2A
Description: Crystal structure of Carminomycin-4-O-methyltransferase (DnrK) in complex with S-adenosyl-L-homocystein (SAH) and 4-methoxy-e-rhodomycin T (M-ET)
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [380-461]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IHYYHTLRCW RKNFLERQKQ IIDLGFDDKF IRTWEYYFDY CAAGFKTLTL RSYQIVFSRP  60
   61 GNVAAFGDDD PFRSSTRKNN II

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.522879
Match: 1kp9A
Description: CmaA1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle