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View Structure Prediction Details

Protein: gi|108708770, gi...
Organism: Oryza sativa Japonica Group
Length: 312 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108708770, gi....

Description E-value Query
Range
Subject
Range
gi|213959160, gi... - gi|50916485|ref|XP_468639.1| putative CCAAT-binding transcription factor [Oryza sativa (japonica cul...
414.0 [0..1] [312..1]

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Predicted Domain #1
Region A:
Residues: [1-143]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIMLLQEMEN HPVQCMAKTN YDFLARNNYP MKQLVQRNSD GDSSPTKSGE SHQEASAVSD  60
   61 SSLNGQHTSP QSDINNNDSC GERDHGTKSV LSLGNTEAAF PPSKFDYNQP FACVSYPYGT 120
  121 DPYYGGVLTG YTSHAFVHPQ ITG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [144-234]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AANSRMPLPV DPSVEEPIFV NAKQYNAILR RRQTRAKLEA QNKAVKGRKP YLHESRHHHA  60
   61 MKRARGSGGR FLTKKELLEQ QQQQQQQKPP P

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 35.853872
Match: PF02045.6
Description: No description for PF02045.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [235-312]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASAQSPTGRA RTSGGAVVLG KNLCPENSTS CSPSTPTGSE ISSISFGGGM LAHQEHISFA  60
   61 SADRHPTMNQ NHRVPVMR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle