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View Structure Prediction Details

Protein: gi|66841018
Organism: Physcomitrella patens
Length: 364 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|66841018.

Description E-value Query
Range
Subject
Range
gi|41323976 - gi|41323976|gb|AAS00054.1| CONSTANS-like protein CO1 [Populus deltoides]
290.0 [0..2] [364..67]
gi|45544881, gi|... - gi|45544883|gb|AAS67377.1| CONSTANS 1 [Lycopersicon esculentum], gi|45544881|gb|AAS67376.1| CONSTANS...
284.0 [0..2] [364..11]
gi|66841020 - gi|66841020|emb|CAI64585.1| CONSTANS-like 3 [Physcomitrella patens]
277.0 [0..1] [363..1]
gi|90657642 - gi|90657642|gb|ABD96940.1| hypothetical protein [Cleome spinosa]
273.0 [0..2] [364..18]
COL2_ARATH - Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1
259.0 [0..2] [364..13]
gi|22854946 - gi|22854946|gb|AAN09828.1| COL1 protein [Brassica nigra]
257.0 [0..2] [364..9]

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Predicted Domain #1
Region A:
Residues: [1-144]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKSCDACHI SSAVVYCRAD AAYLCAGCDG KVHGANKLAS RHERVWMCEV CEVAVAVVTC  60
   61 KADAASLCVS CDTDIHSANP LAQRHERVPV QPLFDCASSA REAHISVPFP ESECHETLKG 120
  121 VEDSCVAEAG SWLLPHPKIP TNAI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.221849
Match: 2junA
Description: No description for 2junA was found.

Predicted Domain #2
Region A:
Residues: [145-231]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IRGSAAADEA PDSPFRARPF SPKLKKQKVD LAADIFSDVD PFLELDDATV TGIQPDSLVP  60
   61 VHIPEGSEDS PSLAHSMEPS FTTDFHL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [232-364]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEKSGYSFGT STLTHSISCS SVDAAVVPDS SLSDISTPYP LDSQGAQELS GTRMPQQVSG  60
   61 PIDTVDREAR VMRYKEKRQK RKFEKTIRYA SRKAYAESRP RIKGRFAKRT DSDVEQLFSS 120
  121 CSMDSSFGVV PSF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle