YRC Public Data Repository - Protein Structure Prediction

Protein:	APOA1BP
Organism:	Homo sapiens
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APOA1BP.

Description	E-value	Query Range	Subject Range
gi\|71682679, gi\|... - gi\|72533474\|gb\|AAI00935.1\| Apolipoprotein A-I binding protein [Homo sapiens], gi\|71682683\|gb\|AAI0093...	6.0E-99	[17..288]	[17..288]
gi\|109017366 - gi\|109017366\|ref\|XP_001116635.1\| PREDICTED: similar to apolipoprotein A-I binding protein isoform 1 ...	1.0E-98	[1..288]	[1..288]
gi\|55588372 - gi\|55588372\|ref\|XP_513889.1\| PREDICTED: similar to Apolipoprotein A-I binding protein isoform 3 [Pan...	2.0E-98	[17..288]	[17..288]
NNRE_PIG - NAD(P)H-hydrate epimerase OS=Sus scrofa GN=APOA1BP PE=2 SV=1	1.0E-96	[14..288]	[14..288]
NNRE_BOVIN - NAD(P)H-hydrate epimerase OS=Bos taurus GN=APOA1BP PE=2 SV=1	2.0E-95	[17..288]	[17..288]
NNRE_RAT - NAD(P)H-hydrate epimerase OS=Rattus norvegicus GN=Apoa1bp PE=2 SV=1	2.0E-91	[14..288]	[14..282]
NNRE_MOUSE - NAD(P)H-hydrate epimerase OS=Mus musculus GN=Apoa1bp PE=1 SV=1	2.0E-91	[14..288]	[14..282]
gi\|73961555 - gi\|73961555\|ref\|XP_854934.1\| PREDICTED: similar to apolipoprotein A-I binding protein [Canis familia...	1.0E-84	[17..288]	[72..343]
gi\|77748479 - gi\|77748479\|gb\|AAI06227.1\| LOC496142 protein [Xenopus laevis]	2.0E-79	[3..287]	[1..289]

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Predicted Domain #1

Region A:
Residues: [1-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRLRALLGL GLLVAGSRVP RIKSQTIACR SGPTWWGPQR LNSGGRWDSE VMASTVVKYL  60
   61 SQEEAQAVDQ ELFNEYQFSV DQLMELAGLS CATAIAKAYP PTSMSRSPPT VLVICGPGNN 120
  121 GGDGLVCARH LKLFGYEPTI YYPKRPNKPL FTALVTQCQK MDIPFLGEMP AEPMTIDELY 180
  181 ELVVDAIFGF SFKGDVREPF HSILSVLKGL TVPIASIDIP SGWDVEKGNA GGIQPDLLIS 240
  241 LTAPKKSATQ FTGRYHYLGG RFVPPALEKK YQLNLPPYPD TECVYRLQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	88.69897
Match:	2dg2A
Description:	No description for 2dg2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits