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View Structure Prediction Details

Protein: gi|57834123, gi|...
Organism: Oryza sativa Japonica Group
Length: 399 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57834123, gi|....

Description E-value Query
Range
Subject
Range
gi|116310947, gi... - gi|125549075|gb|EAY94897.1| hypothetical protein OsI_16697 [Oryza sativa Indica Group], gi|116310947...
544.0 [0..38] [399..38]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFAASPSLS SLAAASSSSS AASDAAVAIS SSSSSPSNPS RELSPRLFSP LPPKPHSLSC  60
   61 SGTQAPRATT GDGSGAAGDR GSGSGGNSGK GGGGGSGSGG GDD

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.03
Match: 1giyB
Description: 70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [104-207]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDDYEEAEFG PLLGFDEVLR LAAARGVSLP ADMMEAAKDA GIREVLLLRY FDLQAGPWPL  60
   61 AAMIRAFSML RNRMLADPSF LFKVGTEVVI DSCCATFAEV QKRG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [208-399]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDFWAEFELY AADLLVGVVV DIALVGLLAP YVRFGKASAS TGPFGRFNRM AGSLPSSVFE  60
   61 AERPGCRFTV QQRIGTFFYK GVLYGSVGFV CGIIGQGIAN MIMTAKRSVK KSDEDIPVPP 120
  121 LIKSAALWGV FLAVSSNTRY QIINGLERVV ETSPIAKRVP PVAMAFTVGV RFANNIYGGM 180
  181 QFVDWARWSG VQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle