YRC Public Data Repository - Protein Structure Prediction

Protein:	MSL2_ARATH
Organism:	Arabidopsis thaliana
Length:	673 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSL2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|72255629 - gi\|72255629\|gb\|AAZ66947.1\| 117M18_28 [Brassica rapa]	279.0	[0..1]	[670..1]
gi\|77951919, gi\|... - gi\|77951919\|ref\|ZP_00816337.1\| similar to Small-conductance mechanosensitive channel [Marinobacter a...	256.0	[0..93]	[459..5]
gi\|24111297, gi\|... - gi\|24111297\|gb\|AAN46772.1\| At5g10490/F12B17_160 [Arabidopsis thaliana], ref\|NP_568230.1\| mechanosens...	249.0	[0..155]	[673..1]
gi\|83633501, gi\|... - gi\|83645458\|ref\|YP_433893.1\| small-conductance mechanosensitive channel [Hahella chejuensis KCTC 239...	244.0	[0..97]	[461..3]
gi\|90416642, gi\|... - gi\|90416642\|ref\|ZP_01224572.1\| Small-conductance mechanosensitive channel [marine gamma proteobacter... gi\|90416642\|ref\|... - Small-conductance mechanosensitive channel [marine gamma proteobacterium HTCC2207]	238.0	[0..97]	[459..4]
gi\|41469524, gi\|... - gi\|50916839\|ref\|XP_468816.1\| putative mechanosensitive ion channel protein [Oryza sativa (japonica c...	237.0	[0..44]	[660..42]
gi\|88800324, gi\|... - gi\|88800324\|ref\|ZP_01115890.1\| Small-conductance mechanosensitive channel [Reinekea sp. MED297], gi\|...	236.0	[0..97]	[460..7]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALYGTLQLS HSLGLCRNQR FCNPENSAMR RRLHISNGPL SLGVPLGQHG FSNILLSNYL  60
   61 RRPICSVPCR TTAFRCHSFS ASGKAIEPAV KAVTVVLTKS HGLMQQFPFV YKLVPAVALL 120
  121 VFSLWGLVPF ARQGRNILLN KNDNGW

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [147-473]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKSGTYHVMT SYVQPLLLWL GALFICRALD PVVLPTEASK IVKDRLLNFV RSLSTVLAFA  60
   61 YCLSSLIQQT QKLFSETSNP SDTRNMGFQF AGKALYSAVW VAAVSLFMEL LGFSTQKWLT 120
  121 AGGLGTVLIT LAGREILTNF LSSVMIHATR PFVLNEWIQT KIEGYEVSGT VEHVGWWSPT 180
  181 IIRGEDREAI HIPNHKFTVN VVRNLTQKTH WRIKTHLAIS HLDVNKINNI VADMRKVLAK 240
  241 NPMVEQQRLH RRVFLENVIP ENQALSILIS CFVKTSHHEE YLGVKEAILL DLLRVISHHR 300
  301 ARLATPIRTI RKMYTETDVE NTPFGES

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.0
Match:	2vv5A
Description:	No description for 2vv5A was found.

Predicted Domain #3

Region A:
Residues: [474-673]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYGGVTSRRP LMLIEPAYKI NGEDKSKSQN RAAKPTAEQE NKGSNPKSKE TSSPDLKANV  60
   61 KVGESPVSDT NKVPEETVAK PVIKAVSKPP TPKDTETSGT EKPKAKRSGG TIKSTKTDET 120
  121 DSSTSSASRS TLEENIVLGV ALEGSKRTLP IEEEIHSPPM ETDAKELTGA RRSGGNGPLV 180
  181 ADKEQKDSQS QPNSGASTEP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits