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View Structure Prediction Details

Protein: gi|145339748, gi...
Organism: Arabidopsis thaliana
Length: 359 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|145339748, gi....

Description E-value Query
Range
Subject
Range
gi|115435332, gi... - gi|125569550|gb|EAZ11065.1| hypothetical protein OsJ_00910 [Oryza sativa Japonica Group], gi|1154353...
307.0 [0..1] [356..37]
gi|27363256, gi|... - gi|27363256|gb|AAO11547.1| At2g46420/F11C10.11 [Arabidopsis thaliana], gi|20197824|gb|AAD23044.2| ex...
302.0 [0..1] [357..1]
gi|113205376 - gi|113205376|gb|AAU93592.2| uncharacterized plant-specific domain TIGR01589 family protein [Solanum...
278.0 [0..9] [341..13]

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Predicted Domain #1
Region A:
Residues: [1-294]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNGQCAQEL QSSTQASHDS QGDQKTNLSI DAPIQDSGSV SASSNDSRKV SRQDIELVQN  60
   61 LIERCLQLYM NRDEVVKTLL TRARIDPGFT TLVWQKLEEE NADFFRAYYI RLKLKKQIIL 120
  121 FNHLLEHQYH LMKYPPGPPK VPLAPIQNGM HPMAPVNMPM GYPVLQHPQM HVPGHPHHLD 180
  181 AMGVSSCHVV NGVPAPANFH PLRMNTANDM VIDTTANDAT PQVIPPNSGA MPEMVASPAS 240
  241 VASSGHFPFA ASDMSGMVMD TSVLDSAFTS DVGPDGEGAG NSRDSLRSFD QIPW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.045757
Match: 1i3qA
Description: RBP1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [295-359]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFSLSDLTAD LSNLGDLGAL GNYPGSPFLP SDSEIFLDSP EQEDIEEFFV DSVPGPRSNS  60
   61 DEEKP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle