YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|145337714, gi...
Organism:	Arabidopsis thaliana
Length:	668 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|145337714, gi....

Description	E-value	Query Range	Subject Range
gi\|79385177 - gi\|79385177\|ref\|NP_177975.2\| unknown protein [Arabidopsis thaliana]	700.0	[0..1]	[668..1]
gi\|18854991, gi\|... - gi\|37536966\|ref\|NP_922785.1\| hypothetical protein [Oryza sativa (japonica cultivar-group)], gb\|AAP55... gi\|125533001 - gi\|125533001\|gb\|EAY79566.1\| hypothetical protein OsI_033525 [Oryza sativa (indica cultivar-group)]	526.0	[0..32]	[633..35]
gi\|67906110 - gi\|67906110\|dbj\|BAE00058.1\| signal transducer and activator of transcription 1 alpha [Mesocricetus a...	420.0	[0..120]	[668..147]
gi\|45385788 - gi\|45385788\|gb\|AAS59771.1\| signal transducer and activator of transcription 1 [Cervus elaphus]	420.0	[0..120]	[668..77]
STAT1_PIG - Signal transducer and activator of transcription 1 OS=Sus scrofa GN=STAT1 PE=2 SV=1	420.0	[0..72]	[668..100]

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Predicted Domain #1

Region A:
Residues: [1-668]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAATIETE KYSLLEDFNV DVEVDDEEYE SFSLCFWVYL LNSTTFPSTI IRQVHSDMSV  60
   61 SAPFLVLDEN KKMMLLPLTL LHKEAPDPVD TSSWTQVPSV STKSKFPLEK WVHVGCEVSR 120
  121 NFMRLFIDGN MEGEQFVTSL LTKNAYPECP RKISLFSVGG DGYSVQGFIQ CAEVLPASDH 180
  181 VEHHYMKDPP LMLSVNKSSS SGIKLDDCGV WQASCKEMFS LDVLLSNAIG QPVHKDVEVV 240
  241 ASLLYADTLP EAKMGEAEAP LLIRDEGVQF SSDDRPIKLL NGRSSFKLKI SQLSSNSDDR 300
  301 LFWIKFGIRN AKDYPFLQAV SNPIRCISVS PEVQPVSVTP KRLTNIDHLS STESPDLLQN 360
  361 TSSVKRIRLG KESVSGSEES YQQCNSHPQT SRQFENGNGM RLHEEDNSSI DSENSEMRYT 420
  421 ISDSTIFKYC LGNLIDKALL LKEITNNSSD DEVLEFANQV SLYSGCSHHS YQINMARELI 480
  481 AEGTNAWILI SRNNQHVHWD NVVYEIEEHF MRISKCSSRS LTHQDFELLR RISGCYEYIT 540
  541 QENFEKMWCW LFPVAYSISR GLINGMWRSS SPKWIEGFIT KEEAEHSLQG QEPGTFILRF 600
  601 PISRTWPHPD AGSLVVTYVG HDFALHHKQL KIDNICESSE RYMDAKPLQD MLLAEPELSR 660
  661 LGRIKRSH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	113.0
Match:	1yvlA
Description:	Structure of Unphosphorylated STAT1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits