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View Structure Prediction Details

Protein: CSLG1_ARATH
Organism: Arabidopsis thaliana
Length: 760 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CSLG1_ARATH.

Predicted Domain #1
Region A:
Residues: [1-181]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METHRKNSVV GNILHTCHPC RRTIPYRIYA IFHTCGIIAL MYHHVHSLVT ANNTLITCLL  60
   61 LLSDIVLAFM WATTTSLRLN PVHRTECPEK YAAKPEDFPK LDVFICTADP YKEPPMMVVN 120
  121 TALSVMAYEY PSDKISVYVS DDGGSSLTFF ALIEAAKFSK QWLPFCKKNN VQDRSPEVYF 180
  181 S

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [182-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SESHSRSDEA ENLKMMYEDM KSRVEHVVES GKVETAFITC DQFRGVFDLW TDKFSRHDHP  60
   61 TIIQVLQNSE TDMDNTRKYI MPNLIYVSRE KSKVSPHHFK AGALNTLLRV SGVMTNSPII 120
  121 LTLDCDMYSN DPATLVRALC YLTDPEIKSG LGYVQFPQKF LGISKNDIYA CENKRLFIIN 180
  181 MVGFDGLMGP THVGTGCFFN RRAFYGPPYM LILPEINELK PYRIADKSIK AQDVLSLAHN 240
  241 VAGCIYEYNT NWGSKIGFRY G

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.69897
Match: 1h7lA
Description: Spore coat polysaccharide biosynthesis protein SpsA
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [443-581]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLVEDYYTGF MLHCEGWRSV FCNPKKAAFY GDSPKCLVDL VGQQIRWAVG LFEMSFSKYS  60
   61 PITYGIKSLD LLMGLGYCNS PFKPFWSIPL TVYGLLPQLA LISGVSVFPK ASDPWFWLYI 120
  121 ILFFGAYAQD LSDFLLEGG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [582-760]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TYRKWWNDQR MLMIKGLSSF FFGFIEFILK TLNLSTPKFN VTSKANDDDE QRKRYEQEIF  60
   61 DFGTSSSMFL PLTTVAIVNL LAFVWGLYGI LFCGGELYLE LMLVSFAVVN CLPIYGAMVL 120
  121 RKDDGKLSKR TCFLAGNLHV GSYCVKLLRP QVTSPLRLIH NNNTSGWFKR KKHNMNESV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle