YRC Public Data Repository - Protein Structure Prediction

Protein:	POT1A_ARATH
Organism:	Arabidopsis thaliana
Length:	467 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POT1A_ARATH.

Description	E-value	Query Range	Subject Range
gi\|45385171 - gi\|45385171\|gb\|AAS59561.1\| Pot1-like protein [Arabidopsis thaliana]	495.0	[0..1]	[467..1]
gi\|116310357 - gi\|116310357\|emb\|CAH67370.1\| OSIGBa0128P10.4 [Oryza sativa (indica cultivar-group)] gi\|125590681 - gi\|125590681\|gb\|EAZ31031.1\| hypothetical protein OsJ_15115 [Oryza sativa Japonica Group]	374.0	[0..2]	[465..23]
gi\|125548652 - gi\|125548652\|gb\|EAY94474.1\| hypothetical protein OsI_015707 [Oryza sativa (indica cultivar-group)] gi\|50924926, gi\|... - gi\|50924926\|ref\|XP_472805.1\| OSJNBa0016O02.10 [Oryza sativa (japonica cultivar-group)], gi\|38606523\|...	371.0	[0..2]	[465..1006]
gi\|123998707, gi... - gi\|123998707\|gb\|ABM87009.1\| POT1 protection of telomeres 1 homolog (S. pombe) [synthetic construct],... POT1 - protection of telomeres 1 homolog (S. pombe)	353.0	[0..4]	[428..5]
gi\|109068051, gi... - gi\|109068051\|ref\|XP_001087820.1\| PREDICTED: protection of telomeres 1 isoform 2 [Macaca mulatta], gi...	353.0	[0..4]	[428..5]
POTE1_MACFA - Protection of telomeres protein 1 OS=Macaca fascicularis GN=POT1 PE=2 SV=1	353.0	[0..4]	[428..5]
gi\|114615760 - gi\|114615760\|ref\|XP_519345.2\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes]	352.0	[0..4]	[428..5]

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Predicted Domain #1

Region A:
Residues: [1-467]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKRESPKL IKIKDAIKLI NQQVSLIGIV LEQREPKQCR NNDWICTLRI IDDTYPSPGL  60
   61 TVNVFSKTLE QLPQIKNHDD MILFTRIKMQ TFDSGERVNA ACSRWVSSFA LFEGVDFVCY 120
  121 QCSTNFHEEE ALYKSAMDDL RKVFAGCSQV IKAMQSISYR TKPCSEVFSF LREIKIGKRF 180
  181 DLVCRILHAD EDTSAVFVWD GTDAPPASIL AKRSEEDKAF SSLSVHTLLS RDVLLSFPTV 240
  241 GTILRVHLSS HLFYRVKPGD WVKLYHLLCE VDRGSWVIKV TSSTKVHHLA QDDRLVEKIM 300
  301 RIYDKRLSSK LGHISFWCFP SPPGLTETDD NCAPFVTLMD IITFPKVTCK YRCIVRVVAA 360
  361 YPWQVEDFCS DENRRHHQVL LTLEDSTATL EAFLCNKDAE YFWGLGFQDT ETLRKKRNWL 420
  421 LGIRESSNFV APRNPPWIEC CILSYYTNKA DPWNTRLYRI FGTRLLH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.221849
Match:	1jb7A
Description:	Telomere end binding protein alpha subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits