YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RNASEH2B
Organism: Homo sapiens
Length: 312 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNASEH2B.

Description E-value Query
Range
Subject
Range
gi|60100403, gi|... - gi|60100403|gb|AAX13343.1| deleted in leukemia 8 protein [Homo sapiens], gi|13375742|ref|NP_078846.1...
0.0 [1..312] [1..312]
gi|109120792 - gi|109120792|ref|XP_001105134.1| PREDICTED: similar to CG11164-PA isoform 1 [Macaca mulatta]
0.0 [1..312] [1..312]
gi|114649741 - gi|114649741|ref|XP_001158221.1| PREDICTED: similar to DLEU8 protein isoform 3 [Pan troglodytes]
0.0 [1..308] [1..308]
RNH2B_RAT - Ribonuclease H2 subunit B OS=Rattus norvegicus GN=Rnaseh2b PE=2 SV=1
gi|55741512 - ref|NP_001007008.1| similar to hypothetical protein FLJ11712 [Rattus norvegicus]
0.0 [1..307] [1..303]
RNH2B_MOUSE - Ribonuclease H2 subunit B OS=Mus musculus GN=Rnaseh2b PE=1 SV=2
7.0E-98 [1..307] [1..304]
gi|73587127 - gi|73587127|gb|AAI03281.1| RNASEH2B protein [Bos taurus]
5.0E-92 [1..308] [66..373]

Back

Predicted Domain #1
Region A:
Residues: [1-236]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGVDCGDG VGARQHVFLV SEYLKDASKK MKNGLMFVKL VNPCSGEGAI YLFNMCLQQL  60
   61 FEVKVFKEKH HSWFINQSVQ SGGLLHFATP VDPLFLLLHY LIKADKEGKF QPLDQVVVDN 120
  121 VFPNCILLLK LPGLEKLLHH VTEEKGNPEI DNKKYYKYSK EKTLKWLEKK VNQTVAALKT 180
  181 NNVNVSSRVQ STAFFSGDQA STDKEEDYIR YAHGLISDYI PKELSDDLSK YLKLPE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [237-312]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSASLPNPPS KKIKLSDEPV EAKEDYTKFN TKDLKTEKKN SKMTAAQKAL AKVDKSGMKS  60
   61 IDTFFGVKNK KKIGKV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle