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View Structure Prediction Details

Protein: gi|115440669, gi...
Organism: Oryza sativa Japonica Group
Length: 950 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115440669, gi....

Description E-value Query
Range
Subject
Range
gi|18409643 - gi|18409643|ref|NP_564993.1| zinc finger (Ran-binding) family protein [Arabidopsis thaliana]
348.0 [0..27] [438..1]
gi|34393925, gi|... - gi|50936205|ref|XP_477630.1| unknown protein [Oryza sativa (japonica cultivar-group)], gi|50508267|d...
329.0 [0..70] [672..10]
gi|91176378 - gi|91176378|gb|ABE26599.1| Zinc finger, RanBP2-type [Medicago truncatula]
282.0 [0..1] [438..1]

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Predicted Domain #1
Region A:
Residues: [1-208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGASKLLSS LLLTSSPLRL RPSAGAFALF LSPPASRRHL LLSSPAPLRT LSTASASAAA  60
   61 GGASSDSYSS GSCHSPFPEW SRLVDRLSAA GYGARAPSPA DELDLDPECG LSSDAEAAVS 120
  121 SFLAFARDRP DLLRSLPRKD VEVLVANAAP ALFKDGEASE LRLRQYLAGE GSDVTQSERA 180
  181 ETIDIVRYLL SYAYGSPVSY LKDKELTD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [209-308]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAVRNILAEF VSFSGFPQTS SYAESTARQN TLGSRPPGQN IEMKRGDWIC TRCSFMNFAR  60
   61 NARCLECNEH RPKKMLTGGE WECPQCVYYN YGRNMSCLRC 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [309-439]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SCKRPGTIPP NPAGAGLDGV AQFLNTSIVG KSEIERKLAE NDQKAERWLN KVSQLDDSAD  60
   61 LSSLAADEDF PEIMPIRKGV NKFVVSTRKT PLERRLANAQ YSSNNSPQDG SSDSKISKTL 120
  121 DRILGRSTST S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [440-517]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VQNNQSGDGD VNTSSNKTTS NLGGIDPVPF VPLSADQFAK PQNSFGDGQS DTQISTEADS  60
   61 MAKSQMDSME RRDDKRSF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [518-685]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTTEEWSKKV AELSNVKDFP SAISDQDFPE IMPMRKGENR FVISKKKDRS LTSPQYKRRS  60
   61 VLEHADNSNF IPFVPFPPDY FAKKNKPVEN SSDAGIVPEG PPSAEKLPET KYSSGNLGNF 120
  121 QNSSQVMGSQ AANNMNNENR NGNYPHQNLS TSGYGYGESI TYQHQPQS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [686-858]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGMVGRSGGA SETGTRNANN NQGSFSESRD RSTYNRGSHS AQPPYKSGYG NNNNAWSSNN  60
   61 NGSNNAWSST RDYDNGGRSD NNPYYNSSTW SSNSTYSNNA AWSSNSSYNS NSAWSSNSSY 120
  121 NSNSAWSNNS NNSWSGSYSD NGGTGSGSSA SRPNQTAGYS SYGESANRGY TGK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [859-950]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLEGSAVKDP DPLDMSEEAK AERWFRRAAQ IKDISELANI PDEDFPEIMP MRKGVNRFVV  60
   61 SKRKTPLERR LTSPQYRRNL PIVSSEPNED AN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle