YRC Public Data Repository - Protein Structure Prediction

Protein:	YCS3_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	189 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCS3_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|50748592 - gi\|50748592\|ref\|XP_421316.1\| PREDICTED: similar to calmodulin 1; Calmodulin 1 (phosphorylase kinase,...	148.0	[0..4]	[106..564]
gi\|46109168, gi\|... - gi\|46109168\|ref\|XP_381642.1\| hypothetical protein FG01466.1 [Gibberella zeae PH-1], gi\|42544736\|gb\|E...	144.0	[0..3]	[186..11]
gi\|67515699, gi\|... - gi\|67515699\|ref\|XP_657735.1\| hypothetical protein AN0131.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	138.0	[0..17]	[186..28]
gi\|32404136, gi\|... - gi\|32404136\|ref\|XP_322681.1\| hypothetical protein [Neurospora crassa], gi\|28916757\|gb\|EAA26525.1\| hy... gi\|85068494 - gi\|85068494\|ref\|XP_955761.1\| hypothetical protein NCU03423 [Neurospora crassa OR74A]	138.0	[0..11]	[186..27]
gi\|94471603 - gi\|94471603\|gb\|ABF21069.1\| mitochondrial calcium sensor cameleon 4mtD3cpv [synthetic construct]	136.0	[0..4]	[117..415]
gi\|70997477, gi\|... - gi\|70997477\|ref\|XP_753486.1\| secretory pathway protein Ssp120 [Aspergillus fumigatus Af293], gi\|6685...	133.0	[0..21]	[188..35]
gi\|76628526 - gi\|76628526\|ref\|XP_874377.1\| PREDICTED: similar to calmodulin 1 [Bos taurus]	132.0	[0..4]	[106..129]
gi\|114677917 - gi\|114677917\|ref\|XP_512771.2\| PREDICTED: similar to calmodulin [Pan troglodytes]	129.0	[0..4]	[106..175]
gi\|119174370, gi... - gi\|90298332\|gb\|EAS27963.1\| hypothetical protein CIMG_09167 [Coccidioides immitis RS], gi\|119174370\|r...	129.0	[0..14]	[186..23]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFSTVGFLF STILFKSAFA GWMDTHMKDE HHIDKYTDES FFRLHDLGKK GYWSDQDILS  60
   61 LYGLFENDEV PFVKKNEVLV DVLKKCDPSG NRRITLDEFL AFRKNGGELT DFGFPGHHGD 120
  121 EEEEFEMHHV EKYHPAGLDE PDENWNHPED IEHFQKHDEI FHGDKKPEER RKHFVKYNNI 180
  181 PDKYRRVSI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.30103
Match:	2aaoA
Description:	Regulatory apparatus of Calcium Dependent protein kinase from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits