YRC Public Data Repository - Protein Structure Prediction

Protein:	UCP10_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	427 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UCP10_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|40746256, gi\|... - gi\|67516977\|ref\|XP_658374.1\| hypothetical protein AN0770.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	260.0	[0..5]	[427..55]
gi\|7486906, gi\|3... - pir\|\|T01898 hypothetical protein T12H20.9 - Arabidopsis thaliana, gi\|3600032\|gb\|AAC35520.1\| contain...	251.0	[0..19]	[424..18]
gi\|169783122 - gi\|169783122\|ref\|XP_001826023.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83774767 - gi\|83774767\|dbj\|BAE64890.1\| unnamed protein product [Aspergillus oryzae]	249.0	[0..5]	[426..55]
gi\|50754935 - gi\|50754935\|ref\|XP_414548.1\| PREDICTED: similar to protein expressed in T-cells and eosinophils in a...	247.0	[0..5]	[426..98]
gi\|34784061 - gi\|34784061\|gb\|AAH56714.1\| Zgc:194819 protein [Danio rerio]	246.0	[0..6]	[426..12]
gi\|109079875 - gi\|109079875\|ref\|XP_001090859.1\| PREDICTED: similar to UBX domain containing 8 [Macaca mulatta]	245.0	[0..5]	[382..183]
gi\|42548787, gi\|... - gi\|46130646\|ref\|XP_389103.1\| hypothetical protein FG08927.1 [Gibberella zeae PH-1], gi\|42548787\|gb\|E...	243.0	[0..5]	[424..55]
gi\|58390101, gi\|... - gi\|58390101\|ref\|XP_317491.2\| AGAP007977-PA [Anopheles gambiae str. PEST], gi\|55237707\|gb\|EAA12408.2\|... AGAP007977-PA - Fas-associated factor\|protein_coding\|3R:3624887:3626278:1\|gene:AGAP007977	240.0	[0..5]	[382..9]
gi\|39970947, gi\|... - gi\|86196666\|gb\|EAQ71304.1\| hypothetical protein MGCH7_ch7g711 [Magnaporthe grisea 70-15], gi\|3997094...	239.0	[0..5]	[426..55]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSRKQEAI DELRNSLDVP ADTAQSVLES FNWDVQEAIE SLTGESSRVD RNSKLGLSFG  60
   61 VFQSVFSLLF SGLHKLWMIL SRVPLISTFI PIFGTTKRVL SPADTANKLV QNLEEQYGTE 120
  121 HIDFF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [126-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDGGYMEALT RIKRNYGVAL LFFTSSKNDD SETFSRSVLM NQELKEFLNR RNILCWTGDV  60
   61 CEDEAFRGSR QFHCTKFPSA VLVMYSPQLS ELVVAAQLHG CLDSSSIITN LTNALAKHLP 120
  121 SLERFRSERE AREAARELRR QQDNAYQASL ARDRERQAFA RAEEERLAKE KEEREIVQKK 180
  181 KKQYRAWLAS NLPPEPSSED EPARLSIRFP DGSRAVRRFK KDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.39794
Match:	1qvrA
Description:	Crystal Structure Analysis of ClpB
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [349-427]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TVESVYNYVD YMLFEKEEPE EFGRATSSSN PVTPPSDYKH DFHFQLYSSL PRALLKPSVA  60
   61 ISTNKAIFPN GTVVVELDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.69897
Match:	2dzkA
Description:	No description for 2dzkA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits